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Table 2 Targets of litchi miRNAs (or families)

From: MicroRNAs and targets in senescent litchi fruit during ambient storage and post-cold storage shelf life

miRNA Target Align score Category Cleavage abundance (tpb) Target annotation
Conserved targets for conserved miRNAs
lch-miR319 lychee_2636 3.5 2 229.2261509 transcription factor TCP4
lch-miR393 lychee_55456 1 0 6189.106073 auxin signaling F-box 2
lch-miR397 lychee_9267 4 2 1910.217924 laccase
Non-conserved targets for conserved miRNAs
lch-miR159 lychee_2636 3.5 2 229.2261509 transcription factor TCP4
lychee_39039 4 2 382.0435848 transcription factor WRKY28
lch-miR396 lychee_55389 1 3 229.2261509 cysteine protease CP1
lychee_53269 3 2 152.8174339 chalcone isomerase
lychee_9553 3.5 2 21012.39716 serine/threonine-protein kinase SRK2A
lychee_15210 4 2 840.4958865 transcription factor AP2/ERF
lychee_31188 4 2 764.0871695 transcription factor WRKY7
lychee_16455 3.5 2 229.2261509 callose synthase 1
Targets for other known miRNAs
lch-miR5252 lychee_39716 3.5 2 458.4523017 glucan endo-1,3-beta-D-glucosidase
lch-miR858 lychee_18326 2.5 0 7258.82811 MYB29 family protein
lychee_30086 4 0 3514.80098 transcription repressor MYB1
Targets for litchi-specific miRNAs
lch-miRC6 lychee_57528 0 0 1203.848091 hypothetical protein
lch-miRC7 lychee_30135 2.5 2 586.4900957 NAC domain-containing protein
lychee_37170 3.5 4 30.86789977 unknown
lychee_7801 2.5 4 30.86789977 Caleosin related protein
lch-miRC10 lychee_4839 4 2 1142.112292 predicted protein