Table 1 Expression profiling of miRNA differentially expressed in A. thaliana callus tissues in response to LPS elicitation (C0 = untreated control, C3 = treated for 3 h)

miR156

TGACAGAAGAGAGTGAGCAC

20

1

15

15

3.9 ↑

miR159

TTTGGATTGAAGGGAGCTCTA

21

10

41

4.1

2.0 ↑

miR160

TGCCTGGCTCCCTGTATGCCA

21

0

1

NA*

miR162

TCGATAAACCTCTGCATCCAG

21

0

2

NA*

miR165

TCGGACCAGGCTTCATCCCCC

21

1

3

3

1.6 ↑

miR166

TTCGGACCAGGCTTCATTCCCC

22

10

26

2.6

1.4 ↑

miR167

GATCATGTTCGCAGTTTCACC

21

6

2

0.33

−1.6 ↓

miR169

CTGGCAAGTTGACCTTGGCTCTGC

24

0

4

NA*

miR2934

TCTTTCTGCAAACGCCTTGGA

21

1

0

NA*

miR319

TTGGACTGAAGGGAGCTCCTTC

22

0

2

NA*

miR396

TTCCACAGCTTTCTTGAACTG

21

73

171

2.34

1.2 ↑

miR398

GGGTTGATATGAGAACACACG

21

1

4

4

2 ↑

miR401

ACAATGGAGATTAGGAGACATTTT

24

1

7

7

2.8 ↑

miR403

GGATTAGATTCACGCACAAACTC

23

0

1

NA*

miR405

AAATGAGTTATGGGTTAGACCCGT

24

4

13

3.25

1.7 ↑

miR407

GGGGAAAAATGTCAAAAAAATCGC

24

0

1

NA*

miR408

TGCACTGCCTCTTCCCTGGCT

21

0

12

NA*

miR5026

AAAGTTAGTAACTCAAAGGCTCGT

24

3

1

0.33

−1.6 ↓

miR5029

AAUGAGAGAGAACACUGCAAA

24

0

1

NA*

miR5635

ATTTAATACCTGAACTTTCAAAGA

24

6

20

3.33

1.7 ↑

miR5638

TCCACACTAGTGTAACGACAGTG

23

0

1

NA*

miR5641

CATGGAGGAGATATTTGGTAA

21

0

1

NA*

miR5642

CAAGAACATCTTCGTTACGGAT

17

58

119

2.05

1.1 ↑

miR5643

AGAAGACACAGAGACAAAGACTCA

24

13

34

2.62

1.4 ↑

miR5651

TCGTTACTATTTGAACCGCACC

22

0

1

NA*

miR5655

CTTTTCCTCCTCCTCCACCACC

22

1

0

NA*

miR5662

AGAGGAAAATATAGAGATCACCAT

24

0

2

NA*

miR773a

TTTGCTTCCAGCTTTTGTC

19

1

0

NA*

miR782

TCTTTCTGCAAACGCCT

17

1

0

NA*

miR783

CAAAAGATCTGGTGATGAAGTTGA

24

0

1

NA*

miR822

GCGGGAAGCATTTGCACATGTT

22

0

1

NA*

miR824

CCTTCTCATCGATGGTCTAGA

21

0

2

NA*

miR829

AGCTCTGATACCAAATGA

18

0

4

NA*

miR842

CATGGTCAGATCCGTCATCCC

21

0

1

NA*

miR855

AAACTCGAAAGCGTCTAGGACTTT

24

0

2

NA*