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Table 2 Summary information of known miRNA families and their transcript abundance identified in all libraries

From: Transcriptome profiling of root microRNAs reveals novel insights into taproot thickening in radish (Raphanus sativus L.)

miRNA family No. of members miRNA reads Normalized read count Fold change
Stage1 Stage2 Stage3 Stage1 Stage2 Stage3 Log 2 (stage2/stage1) Log 2 (stage3/stage1) Log 2 (stage3/stage2)
Conserved miRNA         
miR156 19 1255950 197473 60169 30069.08 2684.56 950.56 −3.49 −4.98 −1.50
miR158 2 557972 982854 368856 20520.33 27460.11 11365.77 0.42 −0.85 −1.27
miR159 11 57202 53482 8715 16.29 0.01 6.67 −10.67 −1.29 9.38
miR160 5 1871124 1233815 437740 16.83 12.20 5.09 −0.46 −1.72 −1.26
miR161 1 113 15 0 6.72 0.80 0.01 −3.08 −9.39 −6.31
miR162 4 2343 1994 1126 0.01 0.27 0.06 4.73 2.55 −2.18
miR164 6 31856 9637 7293 1631.16 422.95 349.19 −1.95 −2.22 −0.28
miR166 14 560689 400549 158105 1040.43 643.12 276.19 −0.69 −1.91 −1.22
miR167 7 11164 13684 9386 96.43 151.64 120.71 0.65 0.32 −0.33
miR168 4 182143 183619 99034 10707.73 9669.95 5744.26 −0.15 −0.90 −0.75
miR169 10 30809 21665 18662 1.66 0.95 0.70 −0.80 −1.24 −0.44
miR171 5 158 470 51 0.01 12.46 2.87 10.28 8.16 −2.12
miR172 6 1234 6039 4154 19.03 26.31 53.21 0.47 1.48 1.02
miR390 5 22804 7150 2234 1301.37 358.88 118.37 −1.86 −3.46 −1.60
miR391 2 4090 5165 275 242.45 272.10 16.10 0.17 −3.91 −4.08
miR393 2 35 36 59 0.06 0.16 0.01 1.42 −2.57 −3.99
miR394 2 702 426 654 0.01 2.12 1.52 7.73 7.25 −0.48
miR395 3 39 50 18 1.90 0.01 0.01 −7.57 −7.57 0.00
miR396 10 2795 1792 1427 109.75 32.46 22.95 −1.76 −2.26 −0.50
miR397 1 2316 172 30 137.69 9.12 1.76 −3.92 −6.29 −2.38
miR398 3 804 1638 28150 47.50 86.46 0.01 0.86 −12.21 −13.08
miR399 4 65 87 26 0.01 0.05 0.18 2.41 4.13 1.73
miR403 1 2175 1604 1053 129.31 85.08 61.64 −0.60 −1.07 −0.46
miR408 3 11998 3335 400 712.19 176.31 23.42 −2.01 −4.93 −2.91
miR482 3 68 2640 2324 0.01 140.03 0.01 13.77 0.00 −13.77
miR535 2 1402 2121 709 0.65 0.80 0.41 0.28 −0.67 −0.96
miR824 2 4469 330 344 219.80 13.05 16.16 −4.07 −3.77 0.31
miR827 1 353 122 27 20.99 6.47 1.58 −1.70 −3.73 −2.03
miR828 2 56 18 33 3.33 0.95 1.05 −1.80 −1.66 0.14
miR2111 2 10 229 47 0.59 4.93 0.94 3.05 0.66 −2.40
miR2118 2 92829 15700 12723 2834.86 0.01 0.01 −18.11 −18.11 0.00
Total 144 4709767 3147905 1223824 280011.51 166968.59 71641.49 −0.75 −1.97 −1.22
Non-conserved miRNA         
miR400 1 147 72 41 8.74 4.28 2.40 −1.03 −1.86 −0.83
miR774 1 307 10640 5198 18.25 632.58 304.29 5.12 4.06 −1.06
miR812 1 0 3145 1503 0.00 186.98 87.98 18.26 17.18 −1.09
miR825 1 1675 0 0 99.58 0.00 0.00 −17.35 −17.38 −0.02
miR831 1 267 295 760 15.87 17.54 44.49 0.14 1.49 1.34
miR845 2 11735 7945 1722 697.69 472.36 100.80 −0.56 −2.79 −2.23
miR858 2 22 28 153 1.31 1.66 3.40 0.35 1.38 1.03
miR859 1 444 956 347 26.40 56.84 20.31 1.11 −0.38 −1.48
miR862 1 76 224 58 4.52 13.32 3.40 1.56 −0.41 −1.97
miR1310 1 1376 273 296 81.81 16.23 17.33 −2.33 −2.24 0.09
miR1510 2 1419 0 1905 84.36 0.00 111.52 −17.11 0.40 17.52
miR1511 2 14510 22556 8500 862.67 1341.03 497.58 0.64 −0.79 −1.43
miR1513 1 484 1001 0 28.78 59.51 0.00 1.05 −15.59 −16.63
miR1520 1 36042 7457 6131 2142.82 443.34 358.90 −2.27 −2.58 −0.30
miR1885 1 3846 1383 1444 228.66 82.22 84.53 −1.48 −1.44 0.04
miR3630 2 266 52 0 15.81 3.09 0.00 −2.35 −14.72 −12.37
miR4378 1 0 9787 1082 0.00 581.87 63.34 19.90 16.70 −3.20
miR5654 1 8098 2411 738 481.45 143.34 43.20 −1.75 −3.48 −1.73
miR5763 1 0 370 669 0.00 22.00 39.16 15.18 16.01 0.83
miR5774 1 0 0 1234 0.00 0.00 72.24 0.00 16.89 16.89
miR6164 1 892 971 615 53.03 57.73 36.00 0.12 −0.56 −0.68
miR7504 1 45 113 5348 2.68 6.72 313.07 1.33 6.87 5.54
miR7510 1 218 383 171 12.96 22.77 10.01 0.81 −0.37 −1.19
miR7532 1 8125 2752 2304 483.06 163.62 134.87 −1.56 −1.84 −0.28
miR8005 1 0 1118 0 0.01 59.2998 0.01 12.53 0.00 −12.53
miR8041 1 18 62 27 1.07 3.69 1.58 1.78 0.56 −1.22
Total 31 90012 73994 40246 5351.52 3865.41 3469.08 −0.47 −0.63 −0.16
Total 175 4799779 3221899 1264070 285363.03 170834.01 75110.57 −0.74 −1.93 −1.19