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Table 5 Genes annotated on the BAC metacontig

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

Gene Name Position on BAC Metacontig (strand) Position on Chr 10 of GD Genome Probable Function
At1g08530-like 49164 – 52233 (+) 18743425 – 18746497 unknown
dmr6-like 93949 – 96036 (+) 18814292 – 18815452 defense reaction
MDP0000927098 (ATL5K-like) 103945 – 104770 (+) 18853768 – 18854596 ubiquitination
MDP0000927091 (Autophagy9-like) 119780 – 126200 (−) 18832988 – 18836788 recycling of cell components
5NG4-like 140776 – 142998 (−) 18862782 – 18864480 auxin-induced transporter
MDP0000912172 (PP2C15-like) 145267 – 146261 (+) 18866768 – 18867762 serine/threonine phosphatase
MDP0000934866 (At1g06150-like) 169780 – 175840 (+) 18884175 – 18886818 bHLH transcription factor
MDP0000163720 (ACC1-like) 184078 – 185923 (−) 18905698 – 18907541 ethylene biosynthesis
  1. Eight genes were found to be expressed in at least one of the tissues investigated and were annotated on the BAC metacontig. Their name, position on the BAC metacontig and on chromosome 10 of the Golden Delicious (GD) draft genome sequence [36] as well as the possible function (according to BLAST searches) are indicated. bHLH, basic helix-loop-helix.