Table 4 Confirmation of miRNA:target pairs by RLM-RACE
miRNA | Target | Annotation | Cleavage sites | ||
|---|---|---|---|---|---|
Upstream | Complementary region | Downstream | |||
miR156/ miR535 | cassava4.1_006419m | SPL2 | / | 10th/11th(8), 11th/12th(3) | −35th/–36th(1) |
cassava4.1_009657m | SPL13b | / | 9th/10th(2), 10th /11th(4), 11th/12th(1) | −1st/–2nd (1) | |
miR159/ miR319 | cassava4.1_004606m | MYB33 | / | 11th/12th(10) | −52th/–53th(1), –115th/ –116th(1) |
cassava4.1_030321m | MYB81 | / | 11th/12th(6) | −59th /–60 th(1) | |
miR394 | cassava4.1_021267m | APL2 | +18th(1), +35th(3), +42th(1), +69th(2) | 2nd(3), 14th(1) | −27th(1), −29th(1), −49th(1), −92th(1), −105th(1), −109th(1), −139th(1) |
cassava4.1_007038m | F-box | / | 10th(2) | −31th(1), −52th(1), −55th(1), −59th(1), −68th(1), −75th(1), −102th(1) | |
miR160 | cassava4.1_002668m | ARF10 | / | 11 th(10) | / |
miR167 | cassava4.1_009942m | RD19 | +5th(1), +25th(1), +145th(1), +196th(1) |  | −41th(1) |
miR169 | cassava4.1_011576m | NF-YA3 | +30th(1), +6th(1) | 11th(5), 15th(1) | / |
miR396 | cassava4.1_003731m | GRF1 | +69th(2) | 6th(1), 11th(6) | −45th(1), −60th(1), −188th(1) |
miR398 | cassava4.1_024493m | DIR-like | +8th(10) | / | / |
miR477 | cassava4.1_008074m | CLB | +37th(8) | / | / |
miR166 | cassava4.1_009671m | GH17 | / | / | −8th(3), −16th(6), −34th(1) |
new-21 | cassava4.1_006393m | EDR2 | / | / | −112th(6), −160th(2), −176th(1), −177th(1), −178th(1), −182th(1) |