Figure 2

SNP density and coverage plots for chromosome 6. A) SNP density plot of the Gh13 chromosome 6. Peak region on chromosome 6 around 30.6 Mb–34.24 Mb. (*) Denotes PCR markers within the SNP peak region. B) Visualization of the 50-Kb region around the beginning of the SNP peak region (30.58–30.63 Mb). SNP marks are denoted in triangles. Bars represent de novo scaffolds of Gh13. C) Illumina coverage plot of the Gh13 genome mapped to the reference H1706 genome D) coverage of the H1706 genome E) coverage of the S. pimpinellifolium genome. Y axes for plots C-E represent number of Illumina reads mapped in that region.