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Table 1 Cyanidin-based anthocyanin biosynthetic genes annotation and accession numbers in GenBank or CarrotDB

From: Transcript profiling of structural genes involved in cyanidin-based anthocyanin biosynthesis between purple and non-purple carrot (Daucus carotaL.) cultivars reveals distinct patterns

Gene family Annotation GenBank ID Scaffolds ID in CarrotDB Predict genes ID in CarrotDB
PAL PAL1 D85850.1 scaffold_229, 168181 g443,75570
  PAL3/PAL4 AB089813.1/ AB435640.1 scaffold_16648, 16649, 169243 g17456, 17457, 76158
CA4H CA4H1 KM359961 scaffold_25749 g24733
  CA4H2 KM359962 scaffold_45729 g36870
4CL 4CL1 KM359963 scaffold_1380 g1988
  4CL2 KM359966 scaffold_2619 g3566
CHS CHS1 AJ006779.1 scaffold_27333, 21408 g25908, 21339
  CHS2/ CHS9 D16255.1/ D16256.1 scaffold_139899, 4932 g61298, 6227
CHI CHI1 KM359964 scaffold_8876 g10389
F3H F3H1 AF184270.1 scaffold_17226 g17950
F3'H F3'H1 KM359965 scaffold_36531 g31974
DFR DFR1 AF184271.1 scaffold_1955, 1956 g31520, 2745
LDOX LDOX1/ LDOX2 AF184273.1/ AF184274.1 scaffold_20348, 20349, 20350 g20467, 78025, 20472
  1. Gene abbreviations: PAL, Phenylalanine ammonia-lyase; CA4H, Cinnamate 4-hydroxylase; 4CL, 4-coumaroyl-coenzyme A ligase; CHS, Chalcone synthase; CHI, Chalcone-flavonone isomerase; F3H, Flavanone 3-hydroxylase; F3′H, Flavonoid 3′- hydroxylase; DFR, Dihydroflavonol 4-reductase; LDOX, Leucoanthocyanidin dioxygenase.