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Table 3 Diversity statistics for wild male/female, cultivated hermaphrodite and female haplotypes groups

From: A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines

  VSVV006 VSVV007 VSVV009 VSVV010
1111 bp 849 bp 690 bp 498 bp
Wild male haplotypes     
Effective 22 22 22 18
S 5 1 6 12
Nh 3 2 3 6
H 0.18 0.09 0.18 0.72
π 0.00041 0.00011 0.00079 0.00375
Tajima's D -1.99 * -1.16 (ns) -2.07 * -1.71 (ns)
Fu and Li's D* -2.91* -1.57 (ns) -3.23 ** -2.10 +
Zeng et al.'s E -1.404* -0.866 (ns) -0.551(ns) -0.334 (ns)
DH test (p-value) 0.148 (ns) 0.331 (ns) 0.023 ** 0.035**
Domesticated hermaphrodite haplotypes     
Effective 22 22 20 26
S 11 2 3 11
Nh 6 3 4 5
H 0.72 0.26 0.36 0.46
π 0.00216 0.00031 0.00091 0.00474
Tajima's D -0.71 (ns) -1.18 (ns) -0.69 (ns) -0.60 (ns)
Fu and Li's D* 0.53 (ns) -0.63 (ns) -0.12 (ns) 0 (ns)
Wild female haplotypes     
Effective 71 71 71 62
S 13 6 26 19
Nh 12 7 16 17
H 0.69 0.47 0.86 0.72
π 0.00136 0.00170 0.00526 0.00744
Tajima's D -1.24 (ns) 0.38 (ns) -1.01 (ns) -0.26 (ns)
Fu and Li's D* -1.81 (ns) 0.24 (ns) 0.15 (ns) 1.28 (ns)
Domesticated female haplotypes     
Effective 21 22 20 16
S 7 4 9 16
Nh 6 3 8 9
H 0.77 0.26 0.77 0.86
π 0.00224 0.00090 0.00500 0.01089
Tajima's D 0.89 (ns) -0.85 (ns) 1.24 (ns) 0.49 (ns)
Fu and Li's D* 0.66 (ns) 1.10 (ns) 0.86 (ns) 0.93 (ns)
  1. S = number of segregating sites, Nh = number of different haplotypes, H = haplotype diversity and π = nucleotide diversity. For the Tajima's D values, Fu and Li's D*, Zeng et al.'s E and DH test : "**" indicate a p-value < 0.01, "*" a p-value < 0.05, "+" a p-value < 0.10 and (ns) non-significance. The E statistics and the DH test were computed using the male haplotype of V. balanseana as an outgroup.