Table 1 Distribution of genome-mapped sequence reads in the sRNA libraries for control and salt-stressed broccoli
Locus class | Control | Salt-stressed | ||||||
|---|---|---|---|---|---|---|---|---|
| Â | Unique sRNA | Percent (%) | Total sRNA | Percent (%) | Unique sRNA | Percent (%) | Total sRNA | Percent (%) |
Total | 9861236 | 100% | 24511963 | 100% | 8574665 | 100% | 21034728 | 100% |
Exon antisense | 33857 | 0.34% | 91879 | 0.37% | 39594 | 0.46% | 83220 | 0.40% |
Exon sense | 56641 | 0.57% | 168950 | 0.69% | 61307 | 0.71% | 138900 | 0.66% |
Intron antisense | 60209 | 0.61% | 215558 | 0.88% | 53351 | 0.62% | 168011 | 0.80% |
Intron sense | 88950 | 0.90% | 406032 | 1.66% | 78075 | 0.91% | 331915 | 1.58% |
miRNA | 6595 | 0.07% | 810592 | 3.31% | 6385 | 0.07% | 1053521 | 5.01% |
rRNA | 137427 | 1.39% | 1909705 | 7.79% | 114451 | 1.33% | 1807910 | 8.59% |
repeat | 392888 | 3.98% | 1402050 | 5.72% | 295752 | 3.45% | 904109 | 4.30% |
snRNA | 4766 | 0.05% | 13349 | 0.05% | 5028 | 0.06% | 13861 | 0.07% |
snoRNA | 3159 | 0.03% | 8316 | 0.03% | 2250 | 0.03% | 4588 | 0.02% |
tRNA | 14221 | 0.14% | 300106 | 1.22% | 10021 | 0.12% | 192288 | 0.91% |