Table 1 Linkage group (LG) assignment, number of alleles (n), and mean heterozygosity (h) estimated from genotypes of 40 EST-SSR markers among seven I. brevicaulis (n B and h B ), six I. fulva (n F and h F ), six I. hexagona (n H and h H ), and seven I. nelsonii (n N and h N ) ecotypes and among 26 Louisiana Iris ecotypes (n L and h L ).
SSR Marker | Motif | SSR Location | LG | n B | n F | n H | n N | n L | h B | h F | h H | h N | h L |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
IM27 | (AAG)12 | 5' UTR | 18 | 2 | 1 | 1 | 1 | 4 | 0.24 | 0.00 | 0.00 | 0.00 | 0.64 |
IM55 | (GAA)9 | CDS | 1 | 6 | 7 | 4 | 1 | 10 | 0.76 | 0.83 | 0.68 | 0.00 | 0.82 |
IM61 | (AGC)7 | CDS | 4 | 5 | 3 | 2 | 3 | 8 | 0.71 | 0.40 | 0.49 | 0.36 | 0.69 |
IM93 | (ACC)8 | CDS | 9 | 6 | 2 | 2 | 2 | 6 | 0.76 | 0.38 | 0.28 | 0.13 | 0.72 |
IM95 | (AAG)8 | 5' UTR | 17 | 6 | 1 | 3 | 3 | 11 | 0.80 | 0.00 | 0.50 | 0.65 | 0.82 |
IM123 | (TCT)10 | CDS | 3 | 7 | 4 | 2 | 5 | 8 | 0.83 | 0.65 | 0.50 | 0.61 | 0.81 |
IM144 | (CAG)6 | CDS | 3 | 5 | 1 | 2 | 2 | 5 | 0.67 | 0.00 | 0.49 | 0.41 | 0.64 |
IM146 | (ACG)6 | CDS | 5 | 4 | 2 | 2 | 4 | 6 | 0.72 | 0.15 | 0.38 | 0.53 | 0.77 |
IM152 | (CTA)6 | CDS | 6 | 4 | 3 | 2 | 2 | 5 | 0.37 | 0.57 | 0.28 | 0.34 | 0.64 |
IM156 | (GAG)7 | CDS | 4 | 4 | 3 | 2 | 1 | 6 | 0.62 | 0.29 | 0.15 | 0.00 | 0.36 |
IM164 | (AGC)6 | CDS | 12 | 2 | 2 | 3 | 4 | 7 | 0.46 | 0.44 | 0.57 | 0.66 | 0.82 |
IM165 | (CAG)6 | 3' UTR | 5 | 3 | 1 | 3 | 2 | 5 | 0.64 | 0.00 | 0.57 | 0.24 | 0.72 |
IM196 | (AAG)7 | CDS | 10 | 6 | 5 | 3 | 7 | 16 | 0.68 | 0.72 | 0.54 | 0.83 | 0.90 |
IM200 | (GAA)23 | CDS | 1 | 9 | 4 | 2 | 3 | 10 | 0.87 | 0.51 | 0.28 | 0.44 | 0.77 |
IM203 | (CTT)7 | 5' UTR | 13 | 7 | 2 | 3 | 3 | 9 | 0.80 | 0.50 | 0.40 | 0.60 | 0.75 |
IM234 | (GCA)7 | CDS | 2 | 3 | 1 | 4 | 5 | 8 | 0.50 | 0.00 | 0.71 | 0.67 | 0.70 |
IM235 | (TGC)6 | 3' UTR | 12 | 4 | 2 | 4 | 3 | 10 | 0.66 | 0.44 | 0.58 | 0.62 | 0.83 |
IM283 | (CCT)8 | CDS | 21 | 2 | 2 | 2 | 1 | 4 | 0.13 | 0.15 | 0.15 | 0.00 | 0.55 |
IM299 | (TA)6 | 3' UTR | 19 | 4 | 4 | 3 | 4 | 7 | 0.66 | 0.51 | 0.57 | 0.73 | 0.80 |
IM303 | (TCC)6 | 5' UTR | 16 | 6 | 5 | 2 | 1 | 10 | 0.80 | 0.69 | 0.15 | 0.00 | 0.77 |
IM319 | (GAG)7 | 5' UTR | 5 | 9 | 1 | 3 | 3 | 11 | 0.87 | 0.00 | 0.29 | 0.52 | 0.82 |
IM327 | (GA)12 | 5' UTR | 20 | 6 | 7 | 4 | 4 | 13 | 0.78 | 0.79 | 0.60 | 0.70 | 0.88 |
IM341 | (GAG)6 | 5' UTR | 12 | 3 | 1 | 3 | 1 | 7 | 0.50 | 0.00 | 0.65 | 0.00 | 0.69 |
IM348 | (AGG)7 | CDS | 2 | 7 | 3 | 8 | 4 | 11 | 0.70 | 0.49 | 0.85 | 0.46 | 0.77 |
IM364 | (CTT)6 | CDS | 9 | 9 | 4 | 2 | 2 | 10 | 0.87 | 0.65 | 0.15 | 0.24 | 0.73 |
IM377 | (ATT)6 | 5' UTR | 7 | 3 | 2 | 1 | 2 | 7 | 0.26 | 0.44 | 0.00 | 0.41 | 0.78 |
IM378 | (TTC)9 | 5' UTR | 6 | 3 | 3 | 2 | 2 | 6 | 0.50 | 0.57 | 0.15 | 0.50 | 0.78 |
IM389 | (CTT)8 | CDS | 14 | 8 | 3 | 1 | 4 | 9 | 0.84 | 0.29 | 0.00 | 0.66 | 0.70 |
IM391 | (TTC)12 | 5' UTR | 15 | 6 | 7 | 2 | 5 | 12 | 0.69 | 0.83 | 0.15 | 0.73 | 0.87 |
IM395 | (TC)8 | 3' UTR | 15 | 3 | 3 | 3 | 4 | 7 | 0.57 | 0.61 | 0.57 | 0.53 | 0.80 |
IM402 | (CTT)10 | 5' UTR | 13 | 7 | 2 | 2 | 3 | 9 | 0.82 | 0.49 | 0.15 | 0.60 | 0.78 |
IM426 | (TCT)7 | 5' UTR | 4 | 6 | 4 | 2 | 4 | 11 | 0.76 | 0.71 | 0.38 | 0.62 | 0.85 |
IM429 | (AGA)8 | 5' UTR | 14 | 3 | 3 | 3 | 2 | 8 | 0.44 | 0.40 | 0.40 | 0.34 | 0.75 |
IM442 | (GA)7 | 5' UTR | 16 | 2 | 1 | 1 | 2 | 2 | 0.34 | 0.00 | 0.00 | 0.46 | 0.47 |
IM450 | (CAG)7 | CDS | 2 | 7 | 2 | 5 | 4 | 10 | 0.74 | 0.28 | 0.53 | 0.64 | 0.70 |
IM460 | (GA)7 | 5' UTR | 8 | 7 | 2 | 3 | 4 | 13 | 0.83 | 0.28 | 0.54 | 0.66 | 0.85 |
IM486 | (AGC)7 | CDS | 11 | 3 | 5 | 4 | 7 | 12 | 0.57 | 0.72 | 0.68 | 0.80 | 0.89 |
IM501 | (AG)13 | 5' UTR | 7 | 6 | 3 | 5 | 4 | 14 | 0.76 | 0.40 | 0.72 | 0.61 | 0.88 |
IM503 | (CT)12 | 5' UTR | 10 | 7 | 6 | 5 | 7 | 18 | 0.82 | 0.82 | 0.68 | 0.76 | 0.89 |
IM526 | (CAC)6 | CDS | 11 | 6 | 3 | 5 | 3 | 9 | 0.73 | 0.40 | 0.76 | 0.52 | 0.83 |
Mean | Â | Â | Â | 5.2 | 3.0 | 2.9 | 3.2 | 8.9 | 0.65 | 0.41 | 0.41 | 0.47 | 0.76 |