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Table 1 Linkage group (LG) assignment, number of alleles (n), and mean heterozygosity (h) estimated from genotypes of 40 EST-SSR markers among seven I. brevicaulis (n B and h B ), six I. fulva (n F and h F ), six I. hexagona (n H and h H ), and seven I. nelsonii (n N and h N ) ecotypes and among 26 Louisiana Iris ecotypes (n L and h L ).

From: EST and EST-SSR marker resources for Iris

SSR
Marker
Motif SSR Location LG n B n F n H n N n L h B h F h H h N h L
IM27 (AAG)12 5' UTR 18 2 1 1 1 4 0.24 0.00 0.00 0.00 0.64
IM55 (GAA)9 CDS 1 6 7 4 1 10 0.76 0.83 0.68 0.00 0.82
IM61 (AGC)7 CDS 4 5 3 2 3 8 0.71 0.40 0.49 0.36 0.69
IM93 (ACC)8 CDS 9 6 2 2 2 6 0.76 0.38 0.28 0.13 0.72
IM95 (AAG)8 5' UTR 17 6 1 3 3 11 0.80 0.00 0.50 0.65 0.82
IM123 (TCT)10 CDS 3 7 4 2 5 8 0.83 0.65 0.50 0.61 0.81
IM144 (CAG)6 CDS 3 5 1 2 2 5 0.67 0.00 0.49 0.41 0.64
IM146 (ACG)6 CDS 5 4 2 2 4 6 0.72 0.15 0.38 0.53 0.77
IM152 (CTA)6 CDS 6 4 3 2 2 5 0.37 0.57 0.28 0.34 0.64
IM156 (GAG)7 CDS 4 4 3 2 1 6 0.62 0.29 0.15 0.00 0.36
IM164 (AGC)6 CDS 12 2 2 3 4 7 0.46 0.44 0.57 0.66 0.82
IM165 (CAG)6 3' UTR 5 3 1 3 2 5 0.64 0.00 0.57 0.24 0.72
IM196 (AAG)7 CDS 10 6 5 3 7 16 0.68 0.72 0.54 0.83 0.90
IM200 (GAA)23 CDS 1 9 4 2 3 10 0.87 0.51 0.28 0.44 0.77
IM203 (CTT)7 5' UTR 13 7 2 3 3 9 0.80 0.50 0.40 0.60 0.75
IM234 (GCA)7 CDS 2 3 1 4 5 8 0.50 0.00 0.71 0.67 0.70
IM235 (TGC)6 3' UTR 12 4 2 4 3 10 0.66 0.44 0.58 0.62 0.83
IM283 (CCT)8 CDS 21 2 2 2 1 4 0.13 0.15 0.15 0.00 0.55
IM299 (TA)6 3' UTR 19 4 4 3 4 7 0.66 0.51 0.57 0.73 0.80
IM303 (TCC)6 5' UTR 16 6 5 2 1 10 0.80 0.69 0.15 0.00 0.77
IM319 (GAG)7 5' UTR 5 9 1 3 3 11 0.87 0.00 0.29 0.52 0.82
IM327 (GA)12 5' UTR 20 6 7 4 4 13 0.78 0.79 0.60 0.70 0.88
IM341 (GAG)6 5' UTR 12 3 1 3 1 7 0.50 0.00 0.65 0.00 0.69
IM348 (AGG)7 CDS 2 7 3 8 4 11 0.70 0.49 0.85 0.46 0.77
IM364 (CTT)6 CDS 9 9 4 2 2 10 0.87 0.65 0.15 0.24 0.73
IM377 (ATT)6 5' UTR 7 3 2 1 2 7 0.26 0.44 0.00 0.41 0.78
IM378 (TTC)9 5' UTR 6 3 3 2 2 6 0.50 0.57 0.15 0.50 0.78
IM389 (CTT)8 CDS 14 8 3 1 4 9 0.84 0.29 0.00 0.66 0.70
IM391 (TTC)12 5' UTR 15 6 7 2 5 12 0.69 0.83 0.15 0.73 0.87
IM395 (TC)8 3' UTR 15 3 3 3 4 7 0.57 0.61 0.57 0.53 0.80
IM402 (CTT)10 5' UTR 13 7 2 2 3 9 0.82 0.49 0.15 0.60 0.78
IM426 (TCT)7 5' UTR 4 6 4 2 4 11 0.76 0.71 0.38 0.62 0.85
IM429 (AGA)8 5' UTR 14 3 3 3 2 8 0.44 0.40 0.40 0.34 0.75
IM442 (GA)7 5' UTR 16 2 1 1 2 2 0.34 0.00 0.00 0.46 0.47
IM450 (CAG)7 CDS 2 7 2 5 4 10 0.74 0.28 0.53 0.64 0.70
IM460 (GA)7 5' UTR 8 7 2 3 4 13 0.83 0.28 0.54 0.66 0.85
IM486 (AGC)7 CDS 11 3 5 4 7 12 0.57 0.72 0.68 0.80 0.89
IM501 (AG)13 5' UTR 7 6 3 5 4 14 0.76 0.40 0.72 0.61 0.88
IM503 (CT)12 5' UTR 10 7 6 5 7 18 0.82 0.82 0.68 0.76 0.89
IM526 (CAC)6 CDS 11 6 3 5 3 9 0.73 0.40 0.76 0.52 0.83
Mean     5.2 3.0 2.9 3.2 8.9 0.65 0.41 0.41 0.47 0.76