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Table 2 Unigene sequences (ESTs) representing proteins with regulatory roles.

From: Isolation, identification and expression analysis of salt-induced genes in Suaeda maritima, a natural halophyte, using PCR-based suppression subtractive hybridization

EST accession number (GenBank)

Name of the proteins/genes

EST redun-dancy for a gene (%)a

BLASTX search E-value

Mean EST length (bp)

FC932788

60S acidic ribosomal protein P0

0.93

4.00E-46

657

FG228222

Adenosine monophosphate binding protein-5 (AMP-binding)

0.23

1.00E-64

543

FC932702

Appr-1-p processing enzyme family protein

1.40

8.00E-12

132

FC932664

ATHB-1 (Homeobox-leucine zipper protein)

3.76

4.00E-18

373

FC932731

C2 domain-containing protein

0.23

3.00E-14

601

FC932705

C2H2 type zinc finger family protein

0.23

3.00E-09

326

FC932694

C3H4-type zinc finger (RING finger) protein

0.23

2.00E-12

247

FC932783

CBS domain-containing protein

0.23

2.00E-25

254

FC932656

DnaJ protein, putativeb

0.47

4.00E-67

467

FC932677

Ethylene responsive element binding protein (EREBP)

0.93

6.00E-16

160

FG228218

Eukaryotic elongation factor 1A

0.23

3.00E-42

321

FC932688

F-box domain containing protein, putative

0.23

0.056

509

FC932771

GTP-binding protein, putative

0.23

8.00E-44

276

FC932675

Homeodomain leucine zipper protein HDZ3b

3.76

2.00E-18

373

FC932662

Jasmonate-induced protein homolog

7.69

0.001

386

FC932679

Jasmonate-induced protein homolog

2.80

1.00E-05

520

FC932804

Leucine-rich repeat family protein

0.23

9.00E-28

315

FC932737

O-linked GlcNAc transferase like

0.93

1.00E-04

307

FC932759

Pasticcino 1

0.23

1.00E-62

626

FC932684

Pre-mRNA splicing factor ATP-dependent RNA helicase-like proteinb

0.23

2.30

610

FC932706

Putative sigma-like transcription factor

0.23

2.00E-09

271

FC932765

Putative Zn-binding protein with RING finger

1.17

7.00E-22

457

FG228209

Transducin family protein

0.23

1.00E-47

380

FG228219

Valyl-tRNA synthetase, putative

0.23

6.00E-36

539

FC932666

White collar 1 protein (WC1)

0.23

9.70

311

  1. ESTs sequences from the forward SSH cDNA library of S. maritima were grouped into singletons and contigs using TIGR Assembler and were termed as unigenes. The unigene sequences were blasted for homology search using BLASTX programme (default) at NCBI database. The search results for those unigenes representing proteins having regulatory function are summarized. EST redundancy of each unigene is also given along with the average size of the ESTs constituting the unigene.
  2. aPercentage of the fraction of ESTs representing a unigene/total no. of ESTs
  3. bGenes reported to be induced by salt
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BMC Plant Biology

ISSN: 1471-2229

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