Skip to main content

Table 1 Putative cis-acting regulatory motifs in P-miR164a promoter.

From: Virus infection elevates transcriptional activity of miR164a promoter in plants

TF

Site Name

First Organism Described

Position

Strand

sequence

ABA

ABRE

Arabidopsis thaliana

-565

+

TACGTG

  

Hordeum vulgare

-567

+

CGTACGTGCA

  

Arabidopsis thaliana

-1067

-

TACGTG

  

Arabidopsis thaliana

-1069

-

TACGTGTC

  

Arabidopsis thaliana

-1755

-

TACGTG

Defense and Stress

TC-rich repeats

Nicotiana tabacum

-597

-

ATTCTCTAAC

Fungal Elicitor

Box-W1

Petroselinum crispum

-495

+

TTGACC

Gibberellin

P-box

Oryza sativa

-499

+

CCTTTTG

Jasmonic acid

CGTCA-motif

Hordeum vulgare

-515

-

CGTCA

  

Hordeum vulgare

-1217

+

CGTCA

  

Hordeum vulgare

-1532

+

CGTCA

 

TGACG-motif

Hordeum vulgare

-515

+

TGACG

  

Hordeum vulgare

-1217

-

TGACG

  

Hordeum vulgare

-1532

-

TGACG

Salicylic acid

TCA-element

Brassica oleracea

-547

-

GAGAAGAATA

  1. Putative motifs recognized by transcription factors (TF) related to ABA, defense and stress, fungal elicitors, gibberellins, jasmonic acid and salicylic acid were detected using PlantCare program (Selected Matrix score for all elements ≥ 5). The site name, consensus sequence and the first organism where it was described were indicated. The positions were assigned relative to the miR164a transcription start site. (+) and (-) indicate sense or antisense DNA strands.