Table 1 Products of mRNAs undergoing conversion editing
Protein Name | # of genes | # of edited nucleotide sites | PDB ID (chain) |
|---|---|---|---|
Transcription machinery | |||
   RNA polymease α | 2 | 24 (2:21:1) | 2a69 (A), 1coo (_) |
   RNA polymerase β | 1 | 19 (6:13:0) | 2a69(C) |
   RNA polymerase β' | 2 | 20 (9:11:0) | 2a69 (D) |
Translation machinery | |||
   ribosomal protein S1 | 2 | 6 (1: 5: 0) |  |
   ribosomal protein S2 | 4 | 34 (12: 22: 0) | 2j00 (B) |
   ribosomal protein S3 | 7 | 74 (20: 32: 22) | 2j00 (C) |
   ribosomal protein S4 | 4 | 52 (18:30:4) | 2j00 (D) |
   ribosomal protein S7 | 4 | 9 (2:7:0) |  |
   ribosomal protein S8 | 1 | 2 (1: 1: 0) | 2j00 (H) |
   ribosomal protein S10 | 2 | 5 (2: 3: 0) | 2j00 (J) |
   ribosomal protein S12 | 3 | 21 (4: 14: 3) | 2j00 (L) |
   ribosomal protein S13 | 3 | 18 (5: 12: 1) | 2j00 (M) |
   ribosomal protein S14 | 3 | 5 (1:3:1) | 2j00(N) |
   ribosomal protein S19 | 5 | 33 (7:19:7) | 2j00(S) |
   ribosomal protein L2 | 4 | 10 (3:4:3) | 2j01(D) |
   ribosomal protein L5 | 5 | 28 (8:20:0) | 2j01(G) |
   ribosomal protein L14 | 1 | 1 (1:0:0) | 2j01(O) |
   ribosomal protein L16 | 4 | 33 (6:19:8) | 2j01(Q) |
   ribosomal protein L20 | 1 | 3 (1:2:0) | 2j01(U) |
   ribosomal protein L21 | 1 | 2 (2:0:0) | 2j01(V) |
   ribosomal protein L22 | 1 | 2 (0:2:0) | 2j01(W) |
   ribosomal protein L23 | 1 | 3 (0:3:0) | 2j01(X) |
   ribosomal protein L33 | 1 | 1 (0:1:0) | 2j01(6) |
   ribosomal protein L36 | 1 | 1 (0:1:0) |  |
   translation initiation factor 1 | 1 | 3 (1:2:0) | 1hr0(W) |
   Clp protease proteolytic subunit 1 | 1 | 6 (0:6:0) | 1yg6(A) |
Respiratory machinery | |||
   NADH dehydrogenase subunit J | 1 | 2 (0:2:0) | 2fug(5) |
   NADH dehydrogenase subunit K | 1 | 3 (1:1:1) | 2fug(6) |
   NADH dehydrogenase subunit I | 1 | 2 (1:1:0) | 2fug(9) |
   NADH dehydrogenase subunit 1 | 23 | 141 (71:60:10) |  |
   NADH dehydrogenase subunit 2 | 25 | 236 (55:147:34) |  |
   NADH dehydrogenase subunit 3 | 7 | 102 (36:62:4) |  |
   NADH dehydrogenase subunit 4 | 10 | 111 (31:77:3) |  |
   NADH dehydrogenase subunit 4L | 9 | 64 (15:48:1) |  |
   NADH dehydrogenase subunit 5 | 7 | 180 (44:94:42) |  |
   NADH dehydrogenase subunit 6 | 5 | 61 (14:40:7) |  |
   NADH dehydrogenase subunit 7 | 4 | 86 (20:49:17) |  |
   NADH dehydrogenase subunit 9 | 6 | 58 (24:33:1) |  |
   cytochrome bc1 complex cytochrome b | 7 | 136 (68:59:9) | 1kyo(C) |
   cytochrome c biogenesis ccmC | 5 | 156 (65:77:14) |  |
   cytochrome c biogenesis ccmF | 15 | 195 (90:88:17) |  |
   cytochrome c biogenesis ccsA | 1 | 12 (2:10:0) |  |
   cytochrome c ccmB | 7 | 278 (108:145:25) |  |
   cytochrome c oxidase I | 20 | 324 (107:196:21) | 1v55(A) |
   cytochrome c oxidase II | 14 | 164 (64:85:15) | 1v55(B) |
   cytochrome c oxidase III | 15 | 155 (42:82:31) | 1v55(C) |
Photosynthesis machinery | |||
   photochlorophyllide reductase subunit chlL | 1 | 9 (5:4:0) | 2afh(E) |
   photochlorophyllide reductase subunit chlB | 8 | 23 (10:13:0) |  |
   photochlorophyllide reductase subunit chlN | 1 | 3 (1:2:0) |  |
   photosystem II subunit V | 2 | 5 (1:3:1) | 2axt(E) |
   photosystem II subunit VI | 2 | 7 (1:5:1) | 2axt(F) |
   photosystem II CP47 protein | 2 | 55 (15:34:6) | 2axt(B) |
   photosystem II H protein | 1 | 4 (0:4:0) | 2axt(H) |
   photosystem II J protein | 1 | 2 (1:1:0) | 2axt(J) |
   photosystem II L protein | 4 | 8 (1:7:0) | 2axt(L) |
   photosystem II M protein | 1 | 1 (0:1:0) | 2axt(M) |
   photosystem II N protein | 1 | 2 (0:2:0) |  |
   photosystem II T protein | 2 | 5 (2:3:0) | 2axt(T) |
   photosystem II Z protein | 1 | 1 (0:0:1) | 2axt(Z) |
   cytochrome b6f complex petG | 1 | 1 (0:1:0) | 1vf5(G) |
   cytochrome b6f complex petL | 1 | 2 (1:1:0) | 1vf5(E) |
   cytochrome b6f subunit 4 | 2 | 19 (4:15:0) | 1vf5(B) |
   cytochrome f | 1 | 2 (2:0:0) | 1vf5(C) |
   photosystem I P700 apoprotein A1 | 1 | 1 (1:0:0) | 1jb0(A) |
   photosystem I P700 apoprotein A2 | 1 | 1 (0:1:0) | 1jb0(B) |
   photosystem I subunit IX | 1 | 1 (0:1:0) | 1jb0(J) |
   photosystem I assembly protein Ycf3 | 2 | 9 (2:7:0) |  |
   ATPase α | 21 | 100 (66:28:6) | 2ck3(A) |
   ATPase β | 1 | 7 (1:6:0) | 2ck3(D) |
   ATPase ε | 1 | 3 (1:2:0) | 1fs0(E) |
   ATP synthase CF0 A chain | 1 | 11 (2:8:1) |  |
   ATP synthase CF0 B chain | 1 | 1 (0:1:0) |  |
   ATP synthase CF0 C chain | 1 | 7 (1:6:0) |  |
   ATP synthase subunit 6 | 12 | 38 (19:17:2) |  |
   ATP synthase subunit 9 | 10 | 58 (17:37:4) |  |
   RUBISCO large subunit | 5 | 35 (11:23:1) | 1uw9(A) |
Other machinery | |||
   Chloroplast envelope membrane protein | 1 | 5 (3:2:0) |  |
   Acetyl-coA carboxylase carboxyl transferase β | 1 | 16 (6:9:1) | 2f9i(B) |
   succinate dehydrogenase subunit 4 | 1 | 1 (0:1:0) |  |
   maturase K (intron-encoded protein) | 1 | 4 (0:4:0) |  |
   maturase R (intron-encoded protein) | 5 | 54 (13:36:5) |  |
Hypothetical organelle proteins | |||
   hypothetical protein ycf1 | 1 | 2 (0:1:1) |  |
   hypothetical protein ycf2 | 1 | 7 (4:2:1) |  |
   hypothetical protein ymf19 | 5 | 20 (4:8:8) |  |
   orf114 | 1 | 2 (0:0:2) |  |
   orf240a | 1 | 1 (1:0:0) |  |
   orf25 | 5 | 45 (8:33:4) |  |
   orfX | 4 | 101 (45:45:11) |  |
Total | 365 | 3560 1219 1983 358 | Â |