From: A flax fibre proteome: identification of proteins enriched in bast fibres
fold enrich.b | ||||||||
---|---|---|---|---|---|---|---|---|
spot ID# | func. cat.a | protein identity | Genbank ID | fibre | non-fibre | p-valuec | Mowse score | pep. countd |
2 | C&E | aconitate hydratase | 4586021 | 1.5 | 0.14 | 64 | 2 | |
3 | C&E | aconitate hydratase | 4586021 | 1.5 | 0.08 | 68 | 2 | |
17 | C&E | β-amylase | 1771782 | 8.8 | < 0.01 | 46 | 2 | |
39 | C&E | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | 168312 | 1.5 | 0.25 | 85 | 2 | |
40 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 168312 | 2.0e | 0.08 | 180 | 4 | |
44 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 1834444 | 6.1 | < 0.01 | 129 | 5 | |
45 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 2687483 | 5.4 | < 0.01 | 130 | 4 | |
46 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 6983900 | 2.9 | < 0.01 | 232 | 6 | |
47 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 1817560 | 3.3 | < 0.01 | 250 | 5 | |
48 | C&E | enolase | 9581744 | 1.1 | 0.65 | 265 | 7 | |
49 | C&E | enolase | 8919731 | 1.1 | 0.93 | 158 | 3 | |
50 | C&E | enolase | 9581744 | 3.4 | 0.02 | 206 | 6 | |
51 | C&E | ribulose-1,5-bisphosphate carboxylase, large subunit | 4098530 | 2.8 | 0.04 | 103 | 4 | |
57 | C&E | fumarate hydratase | 108708038 | 2.5 | 0.01 | 83 | 2 | |
58 | C&E | fumarate hydratase | 15226618 | 1.6 | 0.33 | 100 | 4 | |
59 | C&E | 6-phosphogluconate dehydrogenase | 2529229 | 1.5 | 0.19 | 100 | 3 | |
63 | C&E | citrate synthase | 11066954 | 3.7 | < 0.01 | 123 | 4 | |
68 | C&E | phosphoglycerate kinase | 1161600 | 1.2 | 0.56 | 257 | 4 | |
71 | C&E | phosphoglycerate kinase | 92872324 | 1.7 | 0.06 | 426 | 7 | |
72 | C&E | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | 66735801 | 96 | 3 | |||
73 | C&E | rubisco activase | 13430332 | 6.1 | < 0.01 | 70 | 3 | |
74 | C&E | rubisco activase | 170129 | 5.2 | < 0.01 | 61 | 3 | |
75 | C&E | phosphoglycerate kinase | 3328122 | 2.9 | 0.02 | 250 | 6 | |
77 | C&E | fructose-bisphosphate aldolase | 15227981 | 1.1 | 0.82 | 155 | 3 | |
78 | C&E | fructose-bisphosphate aldolase | 20204 | 2.4 | 0.03 | 102 | 2 | |
79 | C&E | fructose-bisphosphate aldolase | 15227981 | 1.1 | 0.6 | 116 | 2 | |
80 | C&E | fructose-bisphosphate aldolase | 20204 | 1.3 | 0.04 | 177 | 3 | |
81 | C&E | rubisco activase | 4261547 | 2.2 | 0.03 | 60 | 2 | |
82 | C&E | succinate-CoA ligase | 15225353 | 2.3 | 0.02 | 253 | 5 | |
83 | C&E | glyceraldehyde-3-phosphate dehydrogenase | 120666 | 2.6 | 0.01 | 76 | 2 | |
86 | C&E | glyceraldehyde-3-phosphate dehydrogenase | 3023813 | 1.1 | 0.49 | 71 | 3 | |
87 | C&E | glyceraldehyde-3-phosphate dehydrogenase | 74419004 | 3.8 | < 0.01 | 215 | 6 | |
90 | C&E | malate dehydrogenase | 18297 | 1.6 | 0.17 | 241 | 4 | |
91 | C&E | malate dehydrogenase | 18297 | 1.4 | 0.26 | 138 | 4 | |
92 | C&E | malate dehydrogenase | 10334493 | 3.3 | < 0.01 | 296 | 7 | |
93 | C&E | fructokinase | 31652274 | 6.7 | < 0.01 | 142 | 5 | |
94 | C&E | fructokinase | 31652274 | 2.2 | < 0.01 | 154 | 3 | |
96 | C&E | kinase/ribokinase, potential fructokinase | 15224669 | 2 | 0.01 | 208 | 8 | |
1 | ATP | AAA-ATPase | 86212372 | 1.6 | 0.24 | 322 | 10 | |
7 | ATP | ATPase, transitional endoplasmic reticulum | 7378614 | 1.2e | 0.65 | 101 | 4 | |
24 | ATP | vacuolar proton-ATPase | 50251203 | 2.6 | 0.02 | 585 | 13 | |
31 | ATP | ATP binding | 15221770 | 1 | 0.87 | 100 | 4 | |
35 | ATP | F1 ATPase | 12986 | 1.6 | 0.05 | 143 | 6 | |
40 | ATP | ATP synthase β subunit | 21684923 | 2.0e | 0.08 | 192 | 4 | |
42 | ATP | ATP synthase β subunit | 19685 | 1 | 0.99 | 675 | 12 | |
43 | ATP | ATP synthase β subunit | 56784991 | 1.8 | 0.06 | 307 | 7 | |
99 | ATP | F1-ATPase gammma subunit | 303626 | 1 | 0.66 | 84 | 3 | |
105 | ATP | vacuolar V-H+ATPase subunit E | 5733660 | 1.8 | 0.01 | 53 | 2 | |
106 | ATP | vacuolar V-H+ATPase subunit E | 5733660 | 1.1 | 0.82 | 100 | 4 | |
12 | CWP | β-galactosidase | 115437888 | 8.4 | < 0.01 | 43 | 3 | |
13 | CWP | β-galactosidase | 3641863 | 8.9 | < 0.01 | 42 | 2 | |
14 | CWP | β-galactosidase | 3641863 | 5.4 | < 0.01 | 105 | 5 | |
15 | CWP | β-galactosidase | 3641863 | 8.8 | < 0.01 | 96 | 5 | |
16 | CWP | β-galactosidase | 34913072 | 9.3 | < 0.01 | 72 | 4 | |
18 | CWP | MUCILAGE-MODIFIED 4 | 42562732 | 4.1 | < 0.01 | 57 | 2 | |
19 | CWP | rhamnose biosynthetic enzyme | 108707484 | 6.6 | < 0.01 | 100 | 6 | |
27 | CWP | phosphoglucomutase | 12585309 | 1.8 | 0.15 | 170 | 4 | |
28 | CWP | phosphoglucomutase | 6272281 | 3.7 | 0.02 | 122 | 5 | |
36 | CWP | UDP-glucose pyrophosphorylase | 6136112 | 1.4 | 0.37 | 82 | 3 | |
38 | CWP | UDP-glucose pyrophosphorylase | 82659609 | 3.5 | 0.01 | 166 | 6 | |
41 | CWP | UDP-glucose pyrophosphorylase | 9280626 | 1.6e | 0.1 | 129 | 6 | |
64 | CWP | β-galactosidase | 3641863 | 1.2 | 0.51 | 72 | 2 | |
76 | CWP | NAD-dependent epimerase/dehydratase (UXS6) | 15226950 | 6.1 | < 0.01 | 109 | 4 | |
88 | CWP | UDP-glucose 4-epimerase | 12643850 | 1.1 | 0.84 | 60 | 2 | |
101 | CWP | GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase | 12324315 | 2.3 | < 0.01 | 155 | 3 | |
104 | CWP | dTDP-D-glucose 4,6-dehydratase-like | 50253123 | 3 | < 0.01 | 56 | 2 | |
9 | 1C | Met synthase | 77556633 | 2 | < 0.01 | 222 | 6 | |
10 | 1C | Met synthase | 8439545 | 2.2 | < 0.01 | 105 | 3 | |
41 | 1C | S-adenosyl-L-homocysteine hydrolase | 1710838 | 1.6e | 0.1 | 174 | 5 | |
53 | 1C | serine hydroxymethyltransferase | 11762130 | 2.2 | 0.02 | 129 | 4 | |
60 | 1C | Met adenosyltransferase | 37051117 | 2.1 | 0.02 | 94 | 4 | |
55 | MemT | GDP dissociation inhibitor | 8439465 | 2 | 0.13 | 212 | 5 | |
56 | MemT | GDP dissociation inhibitor | 8439465 | 1.9 | 0.08 | 158 | 4 | |
95 | MemT | K+ channel β-subunit | 15219795 | 8.6 | 0.01 | 132 | 4 | |
102 | MemT | 34 kDa outer mitochondrial membrane porin-like protein | 83283993 | 1.7 | 55 | 2 | ||
103 | MemT | 36kDa porin I | 515358 | 3.9 | < 0.01 | 104 | 4 | |
5 | C&S | myosin heavy chain | 108710464 | 2.5 | 0.05 | 46 | 2 | |
6 | C&S | myosin heavy chain | T00727 | 3.6 | 0.01 | 48 | 2 | |
22 | C&S | dynamin central region | 92891191 | 3.1 | 0.09 | 83 | 3 | |
25 | C&S | dynamin-like | 21593776 | 1 | 0.77 | 143 | 4 | |
37 | C&S | β-tubulin | 295851 | 1.8 | 0.06 | 161 | 6 | |
52 | C&S | tubulin/FtsZ family, GTPase domain | 62734655 | 1.7 | 0.06 | 367 | 12 | |
69 | C&S | actin | 32186910 | 3.1 | 0.01 | 281 | 8 | |
70 | C&S | actin | 15242516 | 1.5 | 0.21 | 459 | 12 | |
4 | P&AA | elongation factor EF-2 | 6056373 | 2.5 | 0.02 | 40 | 3 | |
7 | P&AA | ClpC protease | 4105131 | 1.2e | 81 | 4 | ||
8 | P&AA | ClpC protease | 18423214 | 1.7 | 0.06 | 286 | 11 | |
11 | P&AA | HSP 90 | 1708314 | 1.7 | 0.01 | 312 | 10 | |
20 | P&AA | HSP 70-3 | 38325815 | 1.9 | 0.08 | 404 | 11 | |
21 | P&AA | HSP 70 | 62733235 | 1.7 | 0.11 | 612 | 13 | |
23 | P&AA | HSP 70 | 22636 | 2 | 0.04 | 100 | 3 | |
29 | P&AA | chaperonin CPN60-1 | 108706134 | 2.7 | 0.04 | 139 | 6 | |
30 | P&AA | chaperonin CPN60-1 | 108706134 | 1.5 | 0.04 | 327 | 7 | |
32 | P&AA | HSP 60 | 16221 | 2.1 | 0.02 | 140 | 4 | |
54 | P&AA | eukaryotic elongation factor 1A | 24371059 | 2.3 | 0.02 | 227 | 7 | |
61 | P&AA | 26S protease regulatory subunit | 1709798 | 2.1 | < 0.01 | 85 | 3 | |
62 | P&AA | translation initiation factor eIF-4A | 475221 | 1.6 | 0.09 | 262 | 9 | |
65 | P&AA | 26S proteasome subunit P45 | 92870338 | 1.9 | 0.11 | 90 | 3 | |
66 | P&AA | aminomethyltransferase | 3334196 | 3.7 | < 0.01 | 67 | 2 | |
67 | P&AA | elongation factor-1 alpha | 396134 | 1.2 | 0.5 | 54 | 3 | |
72 | P&AA | glutamine synthetase | 121341 | 1.7e | 0.26 | 119 | 4 | |
84 | P&AA | P0 ribosomal protein | 1143507 | 2.5 | < 0.01 | 155 | 3 | |
89 | P&AA | glutamate-ammonia ligase | 99698 | 1.2e | 0.5 | 65 | 3 | |
114 | P&AA | eukaryotic translation initiation factor 5A | 8778393 | 2 | 0.04 | 91 | 2 | |
26 | misc | nucleolar protein NOP5 | 108708132 | 1.4 | 0.37 | 47 | 2 | |
33 | misc | ferric leghemoglobin reductase | 5823556 | 1.6 | 0.2 | 124 | 4 | |
34 | misc | calreticulin | 3288109 | 1 | 0.9 | 78 | 3 | |
85 | misc | peroxidase | 1389835 | 2.4 | 0.03 | 214 | 7 | |
89 | misc | type IIIa membrane protein cp-wap13 | 2218152 | 58 | 3 | |||
97 | misc | annexin | 1429207 | 2.2 | 0.01 | 146 | 4 | |
98 | misc | annexin | 1429207 | 4.1 | 0.03 | 71 | 2 | |
100 | misc | enoyl-ACP reductase | 2204236 | 2.1 | 0.01 | 44 | 2 | |
107 | misc | protein kinase C inhibitor | 20062 | 2.8 | < 0.01 | 97 | 5 | |
108 | misc | 14-3-3 protein | 695767 | 2.7 | 0.01 | 44 | 3 | |
109 | misc | guanine nucleotide regulatory protein | 395072 | 1.5 | 0.31 | 64 | 2 | |
110 | misc | NAD(P)H dependent 6'-deoxychalcone synthase | 18728 | 1.1 | 0.82 | 56 | 3 | |
111 | misc | inorganic pyrophosphatase | 48927683 | 2.8 | 0.02 | 148 | 3 | |
112 | misc | maturase K | 33332553 | 3.4 | 0.01 | 55 | 2 | |
113 | misc | CBS (cystathionine β-synthase) domain-containing | 15238284 | 1.6 | 0.1 | 92 | 2 |