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Table 3 Pearson correlation coefficients comparing expression vectors of jasmonate related genes

From: An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana

P450 name

Data set

Correlation coefficient (r-value) of P450 with jasmonate related gene

  

LOX2

LOX3

LOXL1

LOXL2

AOS

HPL1

AOC1

AOC2

AOC4

OPR2

OPR3

OPRL1/2

TAT3

JR2

CYP74A

organs

0.64

-

-

-

1.00

-

0.88

-

-

0.56

0.69

-

0.60

0.70

AOS

stress

0.67

0.58

-

-

1.00

0.60

0.81

-

-

-

0.71

-

-

-

 

hormones

0.57

0.81

-

0.79

1.00

0.59

0.80

0.80

-

-

0.86

-

0.71

0.55

 

mutants

-

0.61

0.50

-

1.00

-

0.62

-

-

-

-

-

-

0.51

CYP81D1

organs

-

-

-

-

-

-

-

-

-

-

-

0.55

0.66

-

 

stress

0.52

-

-

-

0.57

0.51

0.50

-

-

-

0.60

-

0.61

0.53

 

hormones

-

0.51

-

-

0.52

-

0.63

-

-

-

0.61

-

0.54

-

CYP94C1

stress

-

0.58

-

-

-

-

-

0.67

-

-

0.61

-

-

-

 

hormones

-

0.79

-

0.79

0.69

-

0.58

0.63

-

-

0.79

-

0.55

-

 

mutants

-

0.69

-

0.71

-

-

-

0.62

-

-

0.61

-

-

-

CYP94B1

hormones

-

0.64

-

0.61

0.61

0.53

0.51

-

-

-

0.64

-

-

-

 

mutants

-

0.62

-

0.51

0.63

-

0.51

-

-

-

0.60

-

-

-

CYP96A4

organs

0.60

0.56

-

0.50

0.64

0.52

0.61

-

-

-

0.61

-

0.65

0.57

 

hormones

-

0.64

-

0.60

0.74

0.71

0.60

-

-

-

0.72

-

-

-

CYP74B2

organs

0.73

-

-

-

-

1.00

-

-

0.52

-

-

-

-

0.62

HPL1

stress

0.67

-

-

-

0.60

1.00

0.53

-

-

-

0.57

-

-

0.54

CYP97B3

organs

0.71

-

-

-

0.58

0.59

0.63

-

-

-

-

0.66

-

0.65

CYP90A1

organs

0.63

-

-

-

0.56

-

0.57

-

0.66

-

-

0.51

-

0.56

CYP72A11

organs

0.74

-

-

-

0.69

-

0.78

-

0.53

-

0.56

0.65

0.52

0.67

CYP83B1

organs

-

-

-

-

0.76

-

0.69

-

-

0.57

0.63

-

0.58

0.55

CYP71B7

organs

-

-

-

-

0.80

-

0.82

-

-

0.61

0.52

-

0.52

0.56

CYP72A8

organs

0.59

-

-

-

0.56

-

0.62

-

-

0.60

-

0.68

0.59

-

  1. Shown are genes in the pathways, which have at least one co-expressed P450; only P450s are shown, which have at least six co-expressed jasmonate genes (r > 0.5) in at least one data set. Abbreviations of genes (AGI locus and Affymetrix probe set are given in brackets): LOX2: lipoxygenase 2 (At3g45140, 252618_at); LOX3: lipoxygenase 3 (At1g17420; 261037_at); LOXL1: lipoxygenase like 1 (At1g67560; 260190_at); LOXL2: (At1g72520; 260399_at); AOS, CYP74A: allene oxide synthase (At5g42650; 249208_at); HPL1, CYP74B2: hydroperoxide lyase 1 (At4g15440; 245253_at); AOC1: allene oxide cyclase 1 (At3g25760; 257641_s_at); AOC2: allene oxide cyclase 2 (At3g25780; 257644_at); AOC4: allene oxide cyclase 4 (At1g13280; 259366_at); OPR2: 12-oxophytodienoic acid reductase 2 (At1g76690; 259875_s_at); OPR3: 2-oxophytodienoate reductase 3 (At2g06050; 265530_at); OPRL1/2: 12-oxophytodienoate reductase like 1 and 2 (At1g17990/At1g18020; 255895_at); TAT3: tyrosine aminotransferase 3 (At2g24850; 263539_at); JR2: cystine lyase, jasmonic acid response 2.
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BMC Plant Biology

ISSN: 1471-2229

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