| |
Tom. HBa
|
Tom. Eco
|
Tom. Mbo
|
Pot. POT
|
Pot. PPT
|
|---|
|
Class I retrotransposons
|
16.95
|
9.30
|
13.81
|
11.42
|
8.19
|
|
LTR retrotransposons
|
16.81
|
9.19
|
13.72
|
11.16
|
7.92
|
|
Ty1/Copia
|
5.25
|
4.17
|
4.39
|
2.55
|
2.48
|
|
Ty3/Gypsy
|
11.56
|
5.02
|
9.33
|
8.60
|
5.43
|
|
Unclassified
|
0.00
|
0.00
|
0.00
|
0.01
|
0.01
|
|
Non-LTR retrotransposons
|
0.14
|
0.11
|
0.09
|
0.26
|
0.27
|
|
LINE
|
0.09
|
0.06
|
0.05
|
0.15
|
0.13
|
|
SINE
|
0.05
|
0.05
|
0.04
|
0.11
|
0.14
|
|
Class II DNA transposons
|
0.64
|
0.66
|
0.49
|
1.03
|
1.23
|
|
En-Spm
|
0.26
|
0.26
|
0.21
|
0.27
|
0.27
|
|
Harbinger
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
|
Mariner
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
|
MuDR
|
0.07
|
0.09
|
0.05
|
0.10
|
0.11
|
|
Pogo
|
0.02
|
0.03
|
0.02
|
0.03
|
0.08
|
|
Stowaway
|
0.02
|
0.02
|
0.02
|
0.01
|
0.02
|
|
TcMar-Stowaway
|
x
|
x
|
x
|
0.00
|
0.00
|
|
Tourist
|
x
|
x
|
0.00
|
0.00
|
x
|
|
hAT
|
0.02
|
0.04
|
0.02
|
0.05
|
0.19
|
|
hAT-Ac
|
0.01
|
0.00
|
0.01
|
0.01
|
0.01
|
|
hAT-Tip100
|
0.02
|
0.02
|
0.02
|
0.11
|
0.10
|
|
Unclassified
|
0.22
|
0.20
|
0.14
|
0.45
|
0.45
|
|
Satellites
|
0.00
|
0.00
|
0.00
|
0.04
|
0.03
|
|
Centromeric
|
0.00
|
x
|
0.00
|
0.00
|
0.00
|
|
Subtelomeric
|
x
|
x
|
x
|
0.00
|
0.00
|
|
Unclassified
|
0.00
|
0.00
|
0.00
|
0.04
|
0.03
|
|
Ribosomal genes
|
0.04
|
2.98
|
8.58
|
0.03
|
0.53
|
|
rRNA
|
0.04
|
2.98
|
8.58
|
0.03
|
0.53
|
|
Unclassified
|
0.08
|
0.11
|
0.07
|
0.07
|
0.11
|
|
Centromeric
|
x
|
x
|
x
|
0.00
|
x
|
|
Composite
|
x
|
x
|
x
|
x
|
0.00
|
|
RC/Helitron
|
0.08
|
0.11
|
0.07
|
0.06
|
0.11
|
|
Unknown
|
0.00
|
0.00
|
0.00
|
0.01
|
0.00
|
|
Total
|
17.66
|
13.01
|
22.91
|
12.54
|
10.02
|
- Numbers represent percentages of nucleotides that show similarity to a repeat of the indicated category. An 'x' represents the absence of a repeat family; '0.00' indicates that the repeat is present, but at a frequency lower than 0.005 % of the nucleotides in the BESs. Species names have been abbreviated as follows: Tom.: tomato; Pot.: potato.
