Table 3 Newly identified candidate miRNAs in rice.
From: Identification of novel and candidate miRNAs in rice by high throughput sequencing
Putative miRNA_id | Putative miRNA sequence | Length | Location | Number of hits to rice genome | Frequency in the untreated library | Frequency in the drought-stressed library | Frequency in the salt-stressed library |
|---|---|---|---|---|---|---|---|
spmiR56 | UCUCUUAUAUUUUGAGUGGUCA | 22 | intergenic | 1 | 0 | 0 | 1 |
spmiR58 | UGGAUGGACCUGGAGCAUCGAC | 21 | intergenic | 1 | 0 | 0 | 2 |
cpmiR37 | CGCUAAUGUUGCAGCAAACUG | 20 | intergenic | 2 | 2 | 0 | 0 |
dpmiR41 | UACCCGGUUUUGCAGUCAAGGG | 22 | intergenic | 4 | 0 | 11 | 0 |
spmiR63 | UUUGGACGGAGGGAGUAUCUC | 21 | intergenic | 4 | 0 | 0 | 7 |
cpmiR99 | CGAGUCAUGCAACCAAUCACUG | 22 | intergenic | 5 | 3 | 0 | 2 |
cpmiR130 | ACGCUAUUGUUGCAGCAAACUG | 21 | intergenic | 6 | 2 | 0 | 2 |
cpmiR34 | UUUGAGACGGAGGGAGUAACU | 21 | intergenic | 7 | 31 | 0 | 0 |
cpmiR164 | UUCGAUAGGUACCUUGUCGA | 20 | intergenic | 7 | 1 | 5 | 0 |
cpmiR96 | GGAUGUCGGAAGAGGUUUUUA | 20 | intergenic | 8 | 11 | 0 | 0 |
cpmiR5 | AGAAUGUGUCACAUCCGGUACU | 22 | intergenic | 9 | 15 | 0 | 24 |
cpmiR123 | CCACGUGUAAAGAAGACCCGGU | 22 | intergenic | 9 | 3 | 4 | 2 |
cpmiR179 | UAUUAGGAUGUGUUACAUCC | 20 | intergenic | 9 | 17 | 0 | 0 |
spmiR37 | UACAUUUUAGGACGGAGGAA | 20 | intergenic | 9 | 0 | 2 | 9 |
cpmiR19 | GAUCCUUGAGGGCUAAUUCA | 20 | intergenic | 10 | 4 | 2 | 0 |
dpmiR50 | ACGAUCAAACGUUGGGCACG | 20 | intergenic | 11 | 0 | 12 | 0 |
cpmiR148 | GCCAAAUCAGAUGGAGAGUU | 20 | intergenic | 13 | 6 | 2 | 0 |
cpmiR79 | UCUAGUACUAUGAAUCUGGAU | 21 | intergenic | 15 | 5 | 0 | 4 |
cpmiR155 | GCGCACGGAGGUGAGGAACC | 20 | intergenic | 15 | 14 | 7 | 0 |
cpmiR185 | CCAACUUUGAUCGUCCGUUUU | 21 | intergenic | 15 | 12 | 0 | 7 |
spmiR44 | UUUGUCGGAUGAAGAAAUGACU | 22 | intergenic | 15 | 0 | 0 | 12 |
cpmiR175 | AUGAGACGGAGGGAGUAUAU | 20 | intergenic | 20 | 19 | 0 | 0 |
dpmiR4 | ACUGUUUGACCACUCGUUUUA | 21 | intergenic | 20 | 0 | 10 | 0 |
dpmiR10 | UGUGGCAUGCCACACGGACAU | 21 | intergenic | 20 | 0 | 10 | 0 |
dpmiR56 | CGUUGUAUCUGGUUUUGCGGUU | 22 | intergenic | 20 | 0 | 11 | 0 |
cpmiR47 | UUCGUCCCUUGACCGCAAAAC | 21 | intergenic | 22 | 3 | 3 | 0 |
dpmiR15 | AUUUUGAGUUUUUGUUUGUAUU | 22 | intergenic | 23 | 0 | 4 | 0 |
cpmiR3 | UUAUGAGACGGAGGGAGUAC | 20 | intergenic | 27 | 17 | 0 | 0 |
cpmiR7 | AGACGAGUGGUCAAACAGUGU | 21 | intergenic | 35 | 87 | 5 | 0 |
spmiR27 | UGGCUAUAUUUAGUUUGCUG | 20 | intergenic | 37 | 0 | 0 | 12 |
dpmiR26 | UUUUUAUAGGACGGAGGGAGU | 21 | intergenic | 39 | 0 | 11 | 0 |
cpmiR116 | UUGCACUGUUUGACCAUUCGUC | 22 | intergenic | 52 | 24 | 0 | 0 |
cpmiR105 | CGAUUUUCGUCCUUCAACCG | 20 | intergenic | 58 | 11 | 0 | 0 |
spmiR31 | GGUGGCAGGAGGACGGCGCCA | 21 | intergenic | 68 | 0 | 2 | 3 |
cpmiR74 | UGACCCUAAACCACAAAACC | 20 | intergenic | 72 | 10 | 0 | 0 |
cpmiR110 | UAAGACGGACGAUCAAAGUUG | 21 | intergenic | 76 | 13 | 0 | 6 |
cpmiR85 | ACGAAUUACCCCCCUCGACC | 20 | intergenic | 121 | 8 | 2 | 2 |
cpmiR32 | UGCCCGUGCGUUGCAACGGGU | 21 | intergenic | 129 | 13 | 0 | 9 |
cpmiR182 | UGACUAUCAAAAGUAGAUGGAGG | 23 | intergenic | 212 | 9 | 1 | 18 |
cpmiR188 | ACUAUCAAAAGUAGAUGGAG | 20 | intergenic | 306 | 11 | 1 | 0 |