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Table 5 Haplotypes based on single nucleotide polymorphisms (SNPs) in the 4-coumarate:CoA ligase 2(4CL2) gene of maize and average phenotypic values of lines included in individual haplotypes. Numbers denote bp position of individual SNPs in the alignment.

From: Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds

  11 22 32 72 112 123 132 162 192 217 372 460 Lines (Total = 34) NDF IVDOM DNDF
    s              
H_1 A A G G A G T G C A A C AS01, 04, 06, 14, 15, 18, 22, 24 54.9 74.0 56.7
H_2 G . . . G . C . T G C . AS03, 08–11, 17, 19–21, 30, 31, 35, 36 56.6 72.3 55.2
H_3 G T . A G T C A . . . . AS12, 13 57.6 74.7 59.0
H_4 . . . . . . . . . . . A AS02 52.7 74.6 56.2
H_5 G . . . . . . . . . C A AS07, 23, 25, 26 53.2 76.4 59.0
H_6 G T . A G T C A . . C A AS05, 28, 29, 32, 39 57.9 71.9 55.5
H_7 G . A . G . C . . . . . AS40 59.0 73.9 59.1
  1. NDF: neutral detergent fiber; IVDOM: in vitro digestibility of organic matter; DNDF: digestibility of neutral detergent fiber
  2. s: singleton