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Table 2 Summary of alignment lengths, number of genotypes per alignment, locus structure, number of haplotypes, nucleotide diversity, and Tajima's test for selection for six phenylpropanoid pathway genes in maize.

From: Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds

Gene

Sites (bp)

Genotypes

Locus structure/SNPs

Haplotypes

π coding

π non-coding

π total

Tajima's D

C4H

461

40

5' UTR: 1–33/1

1st exon: 34–461/4

4

0.00355

0.00431

0.00360

1.05NS

4CL1

1,306

27

5' UTR: 1–24/1

1st exon: 25–1044/17

1st intron: 1045–1159/2

2nd exon: 1160–1306/3

4

0.00619

0.00577

0.00615

1.17NS

4CL2

469

34

5' UTR: 1–40/3

1st exon: 41–469/9

7

0.00931

0.01992

0.01025

1.86NS

C3H

607

24

Terminal exon: 1–578/7

3' UTR: 579–607/0

7

0.00251

0

0.00239

-0.72NS

F5H

1,220

16

Exon: 1–76/5

Intron: 77–1220/2

5

0.02905

0.00076

0.00383

0.72NS

CAD

564

38

Terminal exon: 1–378/1

3' UTR: 379–564/0

2

0.00072

0

0.00049

0.21NS

  1. C4H: cinnamate 4-hydroxylase; 4CL: 4-coumarate:CoA ligase; C3H: p-coumarate 3-hydroxylase; F5H: ferulate 5-hydroxylase; CAD: cinnamyl alcohol dehydrogenase
  2. NS Not significant.