Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

Janssen, Bart J; Thodey, Kate; Schaffer, Robert J; Alba, Rob; Balakrishnan, Lena; Bishop, Rebecca; Bowen, Judith H; Crowhurst, Ross N; Gleave, Andrew P; Ledger, Susan; McArtney, Steve; Pichler, Franz B; Snowden, Kimberley C; Ward, Shayna

doi:10.1186/1471-2229-8-16

BMC Plant Biology

Table 6 Early apple fruit gene identified in 'Fuji' which change during 'Royal Gala' fruit development

From: Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

EFD genes from Lee et al. (2007)^a	expect value^b	Genbank acc for array oligo	Annotation
EFD cluster
DW248931	1.00E-155	CN900880	chlorophyll A-B binding protein (LHCI type I (CAB))
DW248987	0	EB127862	Glycolate oxidase
DW248917	1.00E-177	EB127279	lipid protein
DW248920	0	EB148186	Photosystem I reaction center subunit III
DW248842	0	CN929029	Glycolate oxidase
DW248924	0	EB115972	Ascorbate peroxidase
DW248835	0	EB140491	aquaporin TIP1.3
DW248922	0	EB149714	Photosystem I reaction center subunit N
DW248839	0	CN926591	NADH dehydrogenase
DW248976	0	EB112578	Trans-cinnamate 4-monooxygenase (Cytochrome P450 73)
DW248868	0	CN915536	rapid alkalinization factor
DW248881	1.00E-143	CN861574	phytol kinase 2
DW248942	0	CN861788	Photosystem I reaction center subunit V
MD cluster
DW248803	1.00E-87	CN913162	CP12 protein
DW248895	5.00E-95	EB148680	Oxygen-evolving enhancer protein
DW248912	5.00E-163	CN870279	16.9 kDa class I heat shock protein
DW248912	5.00E-163	EG631337	class I heat shock protein
Not selected in Royal Gala fruit development
DW248927	0	EB127218	Polyphenol oxidase
DW248967	0	EB127720	Ferredoxin-thioredoxin reductase
DW248839	0	CN894409	NADH dehydrogenase
DW248924	0	EB138975	Ascorbate peroxidase
DW248940	0	CN899704	oligouridylate binding protein
DW248833	0	EB128528	Hypothetical protein
DW248979	0	EB129884	α-expansin
DW248918	0	CN944949	Photosystem I reaction center subunit II
DW248941	0	CN884411	chlorophyll A-B binding protein
DW248844	0	EB148603	RuBisCO activase
DW248914	0	EB148603	RuBisCO activase
DW248854	1.00E-129	EB148750	Oxygen-evolving enhancer protein 2
DW248983	0	EB131218	fatty acid elongase 3-ketoacyl-CoA synthase 1
DW248994	0	CN912337	Glutamate-1-semialdehyde 2,1-aminomutase

Genes identified by [25] as up-regulated during EFD were used to identify apple genes present on the array.
a Genbank accession for those genes identified in Lee at al as up regulated in early fruit development with homologues present on our array.
b expect value for the BLAST comparison between the Fuji gene and the apple gene which contains the array oligo.

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ISSN: 1471-2229

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