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Table 1 Description of tomato candidate control genes

From: Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

Gene Symbol

Tomato Accession Number*

Arabidopsis

  

Homologous Locus

Locus Description/Function

Amino acid Identity with Tomato (%)

GAPDH

U97257

AT1G13440

Glyceraldehyde-3-phosphate dehydrogenase/Glycolysis-Gluconeogenesis

91.9

EFα1

X53043

AT1G07940

Elongation factor 1-alpha/Translation elongation

67.5

TBP

SGN-U329249

AT1G55520

TATA binding protein/General RNA polymerase II transcription factor

94.8

RPL8

X64562

AT4G36130

Ribosomal protein L8/Structural constituent of ribosome

92.3

APT

BT012816

AT1G27450

Adenine phosphoribosyltransferase/Purine metabolism

84.4

DNAJ

AF124139

AT3G44110

DnaJ-like protein/Protein binding/folding

81.3

TUA

AC122540

AT5G19770

Alpha-tubulin/Structural constituent of cytoskeleton

92.0

TIP41

SGN-U321250

AT4G34270

TIP41-like family protein

67.5

SAND

SGN-U316474

AT2G28390

SAND family protein

61.4

CAC

SGN-U314153

AT5G46630

Clathrin adaptor complexes medium subunit/Endocytic pathway

95.0

Expressed

SGN-U346908

AT4G33380

Expressed sequence

66.4

  1. * Accession numbers from GenBank database or Sol Genomics Network (SGN).