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Table 1 Nucleotide diversity of CBF s

From: Molecular population genetics and gene expression analysis of duplicated CBF genes of Arabidopsis thaliana

Region n L (bp) L-gaps H S π πsyn πnonsyn θW Tajima's D
Promotersa           
CBF1 33 940 850 14 62 0.02749    0.01797 1.96#
CBF2 33 1190 1098 10 16 0.00109    0.00359 -2.32**
CBF3 33 1298 1281 18 48 0.00788    0.00923 -0.54 (N.S.)
TUs           
CBF1 34 953 892 16 28 0.00548 0.01788 0.00221 0.00768 -1.00 (N.S.)
CBF2 34 945 833 12 25 0.00264 0.00741 0.00183 0.00734 -2.23**
CBF3 34 911 904 15 40 0.00685 0.01490 0.00319 0.01082 -1.32 (N.S.)
CBF4 b 34 675 675 3 8 0.00319 0.01183 0.00069 0.00290 0.30 (N.S.)
  1. a One promoter region for each CBF was excluded because of long sequence indels (see "Materials and methods"); b Only CDS regions were analyzed (accession nos.: EF523160~EF523192); n, number of sequences analyzed; L, aligned sequence length; L-gaps, sequence length without missing data; H, number of haplotypes; S, number of segregated sites; π, nucleotide diversity estimated by pair-wise comparisons from all sites; πsyn, nucleotide diversity estimated from synonymous sites; πnonsyn, nucleotide diversity estimated from nonsynonymous sites; θW, nucleotide diversity estimated based on segregating sites from all sites. # p < 0.1; * p < 0.05; ** p < 0.01; N.S., not significant.