Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data

Table 4 Differentially-expressed genes with significance ^a

^a We listed tags that have P-value less than 0.05 and 0.01 as significant thresholds for the dataset, and divided into three categories: PA64s vs. LYP9 (P vs. L), 93-11 vs. LYP9 (N vs. L), and the overlapped tags (Both). The statistics was based on the Audic and Claverie test statistic (IDEG6, http://telethon.bio.unipd.it/bioinfo/IDEG6_form/). ^b Up/Down are calculated with L/[(P+N)/2] for up-regulated tags and [(P+N)/2]/L for down-regulated tags. ^c The microarray data were extracted from experiments performed in our laboratory for a parallel analysis. Total consistent and significant gene numbers are listed

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