Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins

Boonburapong, Bongkoj; Buaboocha, Teerapong

doi:10.1186/1471-2229-7-4

BMC Plant Biology

Table 1 Characteristics of OsCam and OsCML genes and the encoded proteins

From: Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins

Name	Locus¹	Chr²	cDNA length³	Amino Acids⁴	EF hands⁵	% of Met⁶	Identity to OsCaM1(%)⁷	Cys 27⁸	Lys 116⁹	Prenylation¹⁰	Myristoylation¹¹	References
OsCam1-1	LOC_Os03g20370	3	450	149	4	6.0	100.0	+	+			[10]
OsCam1-2	LOC_Os07g48780	7	450	149	4	6.0	100.0	+	+
OsCam1-3	LOC_Os01g16240	1	450	149	4	6.0	100.0	+	+
OsCam2	LOC_Os05g41210	5	450	149	4	6.0	98.7	+	+			[10]
OsCam3	LOC_Os01g17190	1	450	149	4	6.0	98.7	+	+
OsCML1	LOC_Os01g59530	1	564	187	4	4.3	84.6			+		[8,9,10]
OsCML2	LOC_Os11g03980	11	552	183	4	4.9	70.3			+
OsCML3	LOC_Os12g03816	12	552	183	4	4.9	68.9			+
OsCML4	LOC_Os03g53200	3	465	154	4	6.5	68.9	+	+
OsCML5	LOC_Os12g41110	12	501	166	4	4.8	62.2	+	+
OsCML6	LOC_Os11g37550	11	513	170	4	6.5	53.9	+
OsCML7	LOC_Os08g02420	8	447	148	2	2.8	47.7		+
OsCML8	LOC_Os10g25010	10	576	191	4	5.2	47.0
OsCML9	LOC_Os05g41200	5	468	155	1	3.2	46.1
OsCML10	LOC_Os01g72100	1	558	185	4	4.3	45.6		+
OsCML11	LOC_Os01g32120	1	636	211	4	1.4	44.1
OsCML12	LOC_Os01g41990	1	750	249	4	2.8	43.9
OsCML13	LOC_Os07g42660	7	510	169	4	5.3	43.6
OsCML14	LOC_Os05g50180	5	522	173	4	4.6	43.3
OsCML15	LOC_Os05g31620	5	606	201	4	4.0	40.7
OsCML16	LOC_Os01g04330	1	546	181	4	3.9	40.5
OsCML17	LOC_Os02g39380	2	495	164	4	4.9	37.7		+
OsCML18	LOC_Os05g13580	5	477	158	4	5.7	37.7		+
OsCML19	LOC_Os01g72550	1	441	146	3	7.5	37.2
OsCML20	LOC_Os02g50060	2	525	174	4	4.0	35.3				+
OsCML21	LOC_Os05g24780	5	594	197	3	4.6	35.3
OsCML22	LOC_Os04g41540	4	753	250	4	3.6	35.2
OsCML23	LOC_Os01g72540	1	456	151	3	7.9	35.1
OsCML24	LOC_Os07g48340	7	594	197	3	3.0	33.9
OsCML25	LOC_Os11g01390	11	450	149	3	6.7	33.6
OsCML26	LOC_Os12g01400	12	450	149	3	6.7	33.6
OsCML27	LOC_Os03g21380	3	573	190	3	3.2	33.3
OsCML28	LOC_Os12g12730	12	519	172	4	4.8	33.1		+
OsCML29	LOC_Os06g47640	6	513	170	3	4.1	33.1
OsCML30	LOC_Os06g07560	6	711	236	4	2.1	32.8
OsCML31	LOC_Os01g72530	1	456	151	3	5.3	31.6
OsCML32	LOC_Os08g04890	8	591	196	3	2.6	30.2

¹ The Institute of Genomics Research (TIGR) gene identifier number.
² Chromosome number in which the gene resides.
³ Length of the coding region in base pairs.
⁴ Number of amino acids of the deduced amino acid sequence.
⁵ Number of EF hands based on the prediction by InterProScan.
⁶ Percentage of methionine (M) residues in the deduced amino acid sequence.
⁷ Number of identical residues divided by the total number of amino acids that have been aligned expressed in percentage.
⁸ Presence of a cysteine equivalent to Cys26 of typical plant CaMs at residue 7(-Y) of the first EF-hand.
⁹ Presence of a lysine equivalent to Lys115 of typical plant CaMs.
¹⁰ Presence of a putative prenylation site.
¹¹ Presence of a putative myristoylation site.

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ISSN: 1471-2229

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