Table 6 Comparative analysis of SSRs motif polymorphisms between Lolium perenne, Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. The cross-species comparison of SSR motif polymorphisms was performed as described in Methods.
Lolium perennesequence name | LoliumPerenneSSR motif | Festuca arundinaceaaccession no. | Festuca arundinaceaSSR motif | Brachypodium distachyonaccession no. | Brachypodium distachyonSSR motif | Oryza sativaaccession no. | Oryza sativaSSR motif |
|---|---|---|---|---|---|---|---|
gsa_002c_h11 | (ACC)6 | DT687024 | (ACC)1AGC (ACC)2 | BDEST01P1_Contig0330 | No sequence at SSR motif | AK058436 | No SSR motif |
gsa_002d_g10 | (CAG)4 | DT696591 | No SSR motif | BDEST01P1_Contig3728 | No SSR motif | AK103926 | No SSR motif |
gsa_004b_a03 | (GCG)4 | DT706499 | (GCG)4 | BDEST01P1_Contig3390 | No SSR motif | AK058218 | No SSR motif |
gsa_005a_e12 | (CCG)4 | DT703561 | (CCG)4 | BDEST01P1_Contig3040 | (CCG)1 | AK058256 | (CCG)2CG (CCG)1 |
gsa_005c_d09 | (GTC)4 | DT706693 | (GTC)4 | BDEST01P1_Contig3222 | No SSR motif | AK058745 | No SSR motif |
gsa_005d_h08 | (CCG)4 | DT680895 | (CCG)1CA (CCG)1 | BDEST01P1_Contig3684 | No SSR motif | AK058262 | (CCG)1C(CCG)1 |
gsa_006c_d05 | (GCC)5 | DT702323 | (GCC)3 | BDEST01P1_Contig3138 | (GCC)2GGC (GCC)1 | AK103918 | (GCC)4 |
gsa_007c_g07 | (TCC)4 | DT679877 | (TCC)2 | BDEST01P1_Contig3812 | (TCC)1 | AK058319 | No SSR motif |
gsb_001a_g04 | (TCC)4 | DT693705 | (TCC)4 | BDEST01P1_Contig2531 | (TCC)1CC (TCC)3 | AK058266 | (TCC)3 |
r_006d_e02 | (CCG)4 | DT714248 | No sequence at SSR motif | BDEST01P1_Contig2672 | (CCG)2TCG (CCG)4 | AK058319 | No SSR motif |
rg1_005a_h06 | (CTAT)4 | DT703817 | (CTAT)4 | BDEST01P1_Contig3709 | (CTAT)1 | AK058206 | (CTAT)1 |
rg1_010d_b12 | (CCGA)4 | DT711949 | (CCGA)3 | DV479746 | No SSR motif | AK099825 | (CCGA)1 |
rg3_008b_e10 | (CCGA)4 | DT696572 | (CCGA)3 | BDEST01P1_Contig3759 | No SSR motif | AK099825 | (CCGA)1 |
rg6_009d_f05 | (GAT)4 | DT704991 | (GAT)4 | BDEST01P1_ Contig3531 | No sequence at SSR motif | AK073601 | (GAT)3 |
sb_004a_b07 | (GCA)4 | DT681698 | (GCA)1CGAGG (GCA)1 | BDEST01P1_Contig3777 | (GCA)2 | AK058207 | No SSR motif |
ve_006d_h08 | (CGC)4 | DT714632 | No sequence at SSR motif | DV488951 | No sequence at SSR motif | AK071185 | (CGC)2AGC (CGC)1 |
ve_007d_h07 | (CAC)6 | DT708139 | No SSR motif | BDEST01P1_ Contig3106 | (ACC)2GCCGGCC(ACC)1 | AK103919 | No SSR motif |
vr_001c_h04 | (CGC)4 | DT685847 | (CGC)1GCCC (CGC)1 | BDEST01P1_ Contig0404 | No sequence at SSR motif | AK058248 | (CGC)8 |
vr_002a_c03 | (TGG)4TGCTGCCC (CTG)4 | CK802951 | (TGG)4TGCTGCCC(CTG)4 | BDEST01P1_ Contig3491 | (TGG)1TGCTCCTGCTG(CTG)4 | AK058240 | (TGG)3TGCTCCAGTTG(CTG)4 |