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Table 2 Primers and characteristics of microsatellites loci.

From: Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula

Locus

Motif

Origin

Function

Primer sequences (5'-3')

Temp

Linkage group

Genebank Accession

FMT 07

[GA]28

GL

Non coding

GCAGAGAAAAGTAACACCATC

CAGGTTCTTTCTTACTTTCCC

60

7

AY294632

FMT 08

[CT]16 [CA]7

GL

Non coding

CAATCACTGGAAGCAAGGT

AGCCTGCTCATTTGTATTGC

55

7

AY294633

FMT 11

[GA]16

GL

Non coding

GGCCCAACCACAATTTC

CATAACTTCCAATAACTGCCA

55

1

AY294635

FMT 50

[GA]10

GL

Non coding

TAGGGACTTGAGGGGGTG

CAATATCGTAACACATGGCTC

60

3

AY294640

FMT 90

[GA]12

GL

Non coding

GGATGATGAAGACAATGTTAGCA

AGAAGTTATAGAGGGACGAAATTAG

60

1

AY294642

FMTBN1

[TA]6

GB

Non coding

TGTCAATTTCAGTGTTTGCT

AGTAAATGACAATAAGGAGT

50

5

AC126010

MAL367466

[TTC]8

GB

Unknown

ACACAAACAAACATTCTCAC

CATCGGTTGTTAGAGAGAG

60

2

AL367466

ENPB1

[AC]6

GB

ENBP 1 gene

CACTTCCCACTGTCCTAGTCCTAC

GACTCGTCATCACCAGTTTCATCC

55

1

AJ002479

MTIC37

[AAG]10

GB

Unknown

AAGAGCAAGCAAGAGGATGC

TCTTGGCCATTACAATATCATCA

55

4

AL373844

MTIC59

[AAG]6

GB

Unknown

CAAATTTGGAGAAGGCGAAG

CGGTCTCTTCATATTCGCTGA

55

5

AL377524

MTIC126

[AC]8

GB

Unknown

CCCAGTTGCAGACTCTCTCA

GAAGGGTTTACCGGAGGAAG

50

6

AL368250

MTIC243

[TTG]6

GB

Unknown

GGAGGAGGTTATAGGTTTGG

TCAGTGCTCAGCATCTATGT

50

6

n.a.

MTPG85C

[TC]11 [AC]8

GL

Non coding

CCAACACAGTCACCTAACCAA

GTTTCTCCATTGTTTCGTAGG

50

?

AF274878

  1. Microsatellite motif was determined based on the sequence of a cloned allele. Microsatellite loci were obtained from microsatellite-enriched genomic libraries (GL) or using sequence information retrieved from GenBank (GB).
  2. Temp: optimal annealing temperature for the PCR amplification
  3. n.a. non available