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Table 5 NaCl-responsive transcripts related to signal transduction and hormone biosynthesis.

From: Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes

  number of genes
family, group, or pathway in genome on array signal above bkgnd. > 2 fold up > 2 fold down assignment to STEM profiles (Fig. 2) cluster:# of genes
kinases 979 921 426 164 66 n,o:1;a:61;b:69;c:11;d:7; e:1;f:10;g:2;h:4;i:16;j:30; k:3;l:1;n:1;o:12;p:1
   PPC:1 * 564 530 238 105 38 a:36;b:49;c:6;d:5;e:1; f:3;g:2;h:3;i:6;j:17;k:1; l:1;n:1;o:10
1.11.1 LLDK* 41 40 22 13 3 a:8;b:4;g:1;j:1;o:2
1.12.2 LRR II & X* 18 17 10 4 0 a:1;b:3
1.12.4 LRR XI & XII 45 44 27 8 5 a:2;b:2;c:1;d:2;f:1; h:1;i:1;j:3;n:1
1.2.2 RLCK VII* 45 44 25 19 0 a:6;b:9;c:1;d:2;e:1;f:1
1.5.1 WAK 27 23 11 6 5 b:3;c:1;j:3;l:1;o:1
1.6.2 PERK* 18 17 6 4 0 a:1;b:3
1.7.1 S-Domain (type 1) 14 14 10 7 0 a:3;b:3;c:1
1.7.2 DUF 26* 66 61 29 17 5 a:5;b:11;f:1;i:1;j:2;o:1
   PPC:2 52 51 22 6 6 a:3;b:2;f:1;i:2;j:2;k: 1;o:1
   PPC:4 * 279 265 133 47 18 n,o:1;a:20;b:18;c:5; d:1;f:5;i:6;j:10;o:1
4.1 MAP3K* 51 48 20 10 2 a:6;b:3;d:1;i:1
4.2 CRK* 123 119 58 21 10 n,o:1;a:5;b:10;c:3; f:3;i:3;j:4;o:1
4.2.6 RPS6K * 40 40 16 7 1 n,o:1;b:6;c:1;f:1
4.4 unclassified* 27 23 8 7 1 a:1;b:4;c:1;f:1;j:1
phosphatase* 125 116 64 24 9 a:9;b:11;c:3;d:1;g:1; i:5;j:1;k:1
   PPC:6.1 (STKs) 23 19 12 0 3 i:2
   PPC:6.2 DSP 8 8 6 1 2 a:1;i:1;j:1
   PPC:6.3 PP2C * 64 62 38 22 3 a:7;b:11;c:3;g:1;i:1;k:1
response regulator: A * 11 11 8 4 1 a:1;b:1;c:2;i:1
similar to MLO proteins* 14 14 5 3 2 b:3;i:1;j:1
14-3-3 proteins* 13 13 8 0 5 i:1;j:4
ethylene biosynthesis 28 27 16 6 5 a:2;b:3;f:1;i:2;j:2
jasmonic acid biosynthesis* 20 19 11 7 3 a:1;b:5;d:1;j:2;o:1
IAA biosynthesis* 10 9 7 2 2 a:1;f:1;h:1;i:1;n:1
auxin transport* 8 8 4 3 1 a:2;b:1;i:1
Lateral Organ Boundaries class I* 36 34 11 7 0 a:2;b:1;c:3;g:1;p:1
  1. Groups of genes that are significantly enriched in at least one STEM profile at a FDR of < 5% are marked with an asterisk (*). The final column details the frequency of assignment of individual genes to specific STEM profiles identified by corresponding letters in Figure 2. Functional categories in this table are defined according to the following sources: kinases and phosphatases [62]; hormone biosynthesis [23]; all others: [25, 37].