Table 5 NaCl-responsive transcripts related to signal transduction and hormone biosynthesis.
| Â | number of genes | |||||
|---|---|---|---|---|---|---|
family, group, or pathway | in genome | on array | signal above bkgnd. | > 2 fold up | > 2 fold down | assignment to STEM profiles (Fig. 2) cluster:# of genes |
kinases | 979 | 921 | 426 | 164 | 66 | n,o:1;a:61;b:69;c:11;d:7; e:1;f:10;g:2;h:4;i:16;j:30; k:3;l:1;n:1;o:12;p:1 |
   PPC:1 * | 564 | 530 | 238 | 105 | 38 | a:36;b:49;c:6;d:5;e:1; f:3;g:2;h:3;i:6;j:17;k:1; l:1;n:1;o:10 |
1.11.1 LLDK* | 41 | 40 | 22 | 13 | 3 | a:8;b:4;g:1;j:1;o:2 |
1.12.2 LRR II & X* | 18 | 17 | 10 | 4 | 0 | a:1;b:3 |
1.12.4 LRR XI & XII | 45 | 44 | 27 | 8 | 5 | a:2;b:2;c:1;d:2;f:1; h:1;i:1;j:3;n:1 |
1.2.2 RLCK VII* | 45 | 44 | 25 | 19 | 0 | a:6;b:9;c:1;d:2;e:1;f:1 |
1.5.1 WAK | 27 | 23 | 11 | 6 | 5 | b:3;c:1;j:3;l:1;o:1 |
1.6.2 PERK* | 18 | 17 | 6 | 4 | 0 | a:1;b:3 |
1.7.1 S-Domain (type 1) | 14 | 14 | 10 | 7 | 0 | a:3;b:3;c:1 |
1.7.2 DUF 26* | 66 | 61 | 29 | 17 | 5 | a:5;b:11;f:1;i:1;j:2;o:1 |
   PPC:2 | 52 | 51 | 22 | 6 | 6 | a:3;b:2;f:1;i:2;j:2;k: 1;o:1 |
   PPC:4 * | 279 | 265 | 133 | 47 | 18 | n,o:1;a:20;b:18;c:5; d:1;f:5;i:6;j:10;o:1 |
4.1 MAP3K* | 51 | 48 | 20 | 10 | 2 | a:6;b:3;d:1;i:1 |
4.2 CRK* | 123 | 119 | 58 | 21 | 10 | n,o:1;a:5;b:10;c:3; f:3;i:3;j:4;o:1 |
4.2.6 RPS6K * | 40 | 40 | 16 | 7 | 1 | n,o:1;b:6;c:1;f:1 |
4.4 unclassified* | 27 | 23 | 8 | 7 | 1 | a:1;b:4;c:1;f:1;j:1 |
phosphatase* | 125 | 116 | 64 | 24 | 9 | a:9;b:11;c:3;d:1;g:1; i:5;j:1;k:1 |
   PPC:6.1 (STKs) | 23 | 19 | 12 | 0 | 3 | i:2 |
   PPC:6.2 DSP | 8 | 8 | 6 | 1 | 2 | a:1;i:1;j:1 |
   PPC:6.3 PP2C * | 64 | 62 | 38 | 22 | 3 | a:7;b:11;c:3;g:1;i:1;k:1 |
response regulator: A * | 11 | 11 | 8 | 4 | 1 | a:1;b:1;c:2;i:1 |
similar to MLO proteins* | 14 | 14 | 5 | 3 | 2 | b:3;i:1;j:1 |
14-3-3 proteins* | 13 | 13 | 8 | 0 | 5 | i:1;j:4 |
ethylene biosynthesis | 28 | 27 | 16 | 6 | 5 | a:2;b:3;f:1;i:2;j:2 |
jasmonic acid biosynthesis* | 20 | 19 | 11 | 7 | 3 | a:1;b:5;d:1;j:2;o:1 |
IAA biosynthesis* | 10 | 9 | 7 | 2 | 2 | a:1;f:1;h:1;i:1;n:1 |
auxin transport* | 8 | 8 | 4 | 3 | 1 | a:2;b:1;i:1 |
Lateral Organ Boundaries class I* | 36 | 34 | 11 | 7 | 0 | a:2;b:1;c:3;g:1;p:1 |