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Table 4 NaCl-responsive transcripts related to protein metabolism.

From: Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes

  number of genes
family, group, or pathway in genome on array signal above bkgnd. > 2 fold up > 2 fold down assignment to STEM profiles (Fig. 2) cluster:# of genes
ribosome large subunit* 121 100 83 0 59 i:19;j:36;n:4
ribosome small subunit* 94 87 74 0 53 i:24;j:24;n:1;o:1
ribosome plastidic 13 13 9 0 3 i:1;j:1;n:1
peptidylprolyl isomerase (PPI)       
   PPI: cyclophilin* 28 28 19 1 9 b:1;d:1;i:1;j:8;l:1; m:1
   PPI: FKB 23 22 7 1 2 a:1;j:2
   PPI: parvulin 3 3 3 0 2 i:1;j:1
heat shock proteins* 70 68 51 36 5 a:31;b:3;c:1;f:1;i:2; j:2;o:1
peptidase* 557 524 265 43 73 a:20;b:12;c:1;d:4;f:6; g:4;h:1;i:16;j:46;k:3; l:2;n:2;o:6
   aspartic peptidase 76 69 31 7 8 a:4;b:2;f:1;i:2;j:5;o:1
   cysteine peptidase 102 102 55 11 15 a:5;b:2;d:3;f:3;i:4; j:7;k:2;l:1;n:1;o:1
family C26* 10 10 9 4 2 a:1;b:1;d:3;i:1;j:1
   metallopeptidase 85 78 44 4 6 a:2;f:2;i:1;j:4
   serine peptidase* 261 244 112 18 31 a:8;b:6;c:1;d:1;g:4; h:1;i:8;j:18;k:1;l:1; n:1;o:4
sub-family S10-004* 19 17 7 0 6 i:1;j:5
sub-family S10-005* 24 24 9 0 3 g:1;j:1;o:2
sub-family S33-UPW* 45 42 22 6 7 a:2;b:2;c:1;d:1;g:2; i:1;j:3;l:1;o:1
   threonine peptidase * 28 28 22 3 13 a:1;b:2;i:1;j:12
20S proteasome subunit* 19 19 17 0 12 i:1;j:11
19S proteasome* 33 31 24 0 10 i:3;j:6
SKP1/ASK1* 17 16 9 5 3 a:2;b:1;h:2;j:3
   E3 RING-type* 430 414 178 47 34 a:16;b:17;c:4;d:8;f:4; h:3;i:14;j:14;k:1;l:3;n:1; p:2
   E3 Ubox-type* 61 53 30 16 3 a:6;b:8;c:1;d:1;j:2; o:1
Ubox class III* 12 11 9 7 2 b:5;c:1;d:1;j:1;o:1
  1. Groups of genes that are significantly enriched in at least one STEM profile at a FDR of < 5% are marked with an asterisk (*). The final column details the frequency of assignment of individual genes to specific STEM profiles identified by corresponding letters in Figure 2. Functional categories in this table are defined according to the following sources: ribosomes [104] ; PPIs [55]; peptidases [59]; 19S proteasome [24]; E3 RING [105]; HSPs, SKP1s, E3 Ubox [25].