Table 4 NaCl-responsive transcripts related to protein metabolism.
| Â | number of genes | |||||
|---|---|---|---|---|---|---|
family, group, or pathway | in genome | on array | signal above bkgnd. | > 2 fold up | > 2 fold down | assignment to STEM profiles (Fig. 2) cluster:# of genes |
ribosome large subunit* | 121 | 100 | 83 | 0 | 59 | i:19;j:36;n:4 |
ribosome small subunit* | 94 | 87 | 74 | 0 | 53 | i:24;j:24;n:1;o:1 |
ribosome plastidic | 13 | 13 | 9 | 0 | 3 | i:1;j:1;n:1 |
peptidylprolyl isomerase (PPI) | Â | Â | Â | Â | Â | Â |
   PPI: cyclophilin* | 28 | 28 | 19 | 1 | 9 | b:1;d:1;i:1;j:8;l:1; m:1 |
   PPI: FKB | 23 | 22 | 7 | 1 | 2 | a:1;j:2 |
   PPI: parvulin | 3 | 3 | 3 | 0 | 2 | i:1;j:1 |
heat shock proteins* | 70 | 68 | 51 | 36 | 5 | a:31;b:3;c:1;f:1;i:2; j:2;o:1 |
peptidase* | 557 | 524 | 265 | 43 | 73 | a:20;b:12;c:1;d:4;f:6; g:4;h:1;i:16;j:46;k:3; l:2;n:2;o:6 |
   aspartic peptidase | 76 | 69 | 31 | 7 | 8 | a:4;b:2;f:1;i:2;j:5;o:1 |
   cysteine peptidase | 102 | 102 | 55 | 11 | 15 | a:5;b:2;d:3;f:3;i:4; j:7;k:2;l:1;n:1;o:1 |
family C26* | 10 | 10 | 9 | 4 | 2 | a:1;b:1;d:3;i:1;j:1 |
   metallopeptidase | 85 | 78 | 44 | 4 | 6 | a:2;f:2;i:1;j:4 |
   serine peptidase* | 261 | 244 | 112 | 18 | 31 | a:8;b:6;c:1;d:1;g:4; h:1;i:8;j:18;k:1;l:1; n:1;o:4 |
sub-family S10-004* | 19 | 17 | 7 | 0 | 6 | i:1;j:5 |
sub-family S10-005* | 24 | 24 | 9 | 0 | 3 | g:1;j:1;o:2 |
sub-family S33-UPW* | 45 | 42 | 22 | 6 | 7 | a:2;b:2;c:1;d:1;g:2; i:1;j:3;l:1;o:1 |
   threonine peptidase * | 28 | 28 | 22 | 3 | 13 | a:1;b:2;i:1;j:12 |
20S proteasome subunit* | 19 | 19 | 17 | 0 | 12 | i:1;j:11 |
19S proteasome* | 33 | 31 | 24 | 0 | 10 | i:3;j:6 |
SKP1/ASK1* | 17 | 16 | 9 | 5 | 3 | a:2;b:1;h:2;j:3 |
   E3 RING-type* | 430 | 414 | 178 | 47 | 34 | a:16;b:17;c:4;d:8;f:4; h:3;i:14;j:14;k:1;l:3;n:1; p:2 |
   E3 Ubox-type* | 61 | 53 | 30 | 16 | 3 | a:6;b:8;c:1;d:1;j:2; o:1 |
Ubox class III* | 12 | 11 | 9 | 7 | 2 | b:5;c:1;d:1;j:1;o:1 |