Rapid and accurate pyrosequencing of angiosperm plastid genomes

BMC Plant Biology

Table 6 Characteristics of GS 20 sequencing errors

	Nandina	Platanus	combined
proportion of length-variant HR errors	100.0	61.5	84.8
proportion of TLI HR errors	0.0	38.5	15.2
proportion of A/T HR errors	95.0	100.0	97.0
proportion of C/G HR errors	5.0	0.0	3.0
proportion of errors associated with HR sets	55.0	46.2	51.5
proportion of errors associated with HRs ≥ 5	45.0	76.9	57.6
average length of HR associated with error	5.4	6.5	5.8
proportion of HR-associated insertion errors	85.0	69.2	78.8
proportion of HR-associated deletion errors	15.0	30.8	21.2

Characteristics of observed GS 20 sequencing errors that were associated with homopolymer runs. All values are reported in percent. HR = homopolymer run; TLI = transposition-like insertion (see text).

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