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Table 3 Blast result of published contigs (RRIM 600) vs BPM 24 master circle showing 11 rearranged contigs

From: Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript

Query id+

% identity

Align length

q. start*

q. end*

24 start±

24 end±

e-value

AJJZ011005169.1

85.93

135

549

683

338566

338700

7e-27

 

96.74

276

937

1211

854221

854495

4e-130

AJJZ011005166.1

98.79

1077

241

1317

21535

20459

0

 

96

200

1

198

1017254

1017055

4e-87

AJJZ010488272.1

100

144

182

325

115093

115236

3e-78

 

96.76

185

51

235

159007

159191

2e-88

 

100

117

1

117

221602

221486

4e-62

AJJZ010386739.1

98.62

217

186

401

179706

179922

4e-112

 

98.3

176

1

176

1031613

1031788

5e-90

AJJZ010369193.1

99.35

308

1

308

423994

424301

4e-171

 

100

203

306

508

663278

663076

3e-113

AJJZ010233339.1

94.44

162

567

728

202461

202622

1e-66

 

82.95

88

415

502

741897

741984

3e-08

 

86.92

107

414

520

882085

882190

1e-19

AJJZ010228768.1

92.62

149

2483

2631

15228

15376

7e-54

 

84.71

327

2631

2934

15404

15728

6e-67

 

82.71

451

1622

2060

357491

357055

9e-66

 

87.14

770

831

1596

358263

357495

0

AJJZ010174367.1

91.99

1548

5871

7413

156744

158290

0

 

92.52

1096

9138

10223

529298

528203

0

 

89.38

885

10204

11068

894891

895774

0

 

94.33

141

11065

11203

895680

895820

3e-40

AJJZ010143874.1

99.97

7965

1

7965

38753

30789

0

 

100

1864

7733

9596

127434

125571

0

AJJZ010142287.1

99.18

612

1

612

338444

339054

0

 

100

585

512

1096

854280

854864

0

AJJZ010039172.1

98.4

187

80

266

17960

17774

6e-97

 

99.6

248

266

513

32045

32292

1e-137

  1. +Italics indicates that the rearrangement or part of it has been confirmed by PCR.
  2. *Start and end of query sequence alignment location.
  3. ±Start and end of master circle sequence alignment location. Bold indicates a gene is located within 1 kb.