Figure 3
From: Annotation of gene function in citrus using gene expression information and co-expression networks
Predicted cluster involved in GABA shunt (fruit_cluster102) and citric Acid Catabolism (fruit_cluster11). (A) The predicted fruit MCL cluster 102 contains 76 genes connected by 242 edges. Genes involved in protein metabolism, redox, amino acid metabolism, lipid metabolism and transcriptional regulation are represented by blue, purple, red, orange and green respectively. Nodes coloured in light blue represents genes encoding proteins of miscellaneous functions/ unknown (See additional files for full details). (B) The predicted fruit MCL cluster 11 contains 238 genes densely connected by 1330 edges forming a central cluster. Genes involved in protein metabolism, stress, transcriptional regulation, TCA cycle/mitochondrial electron transcript and signalling are represented by orange, red, green, yellow and purple respectively. Nodes coloured in light blue represents genes encoding proteins of miscellaneous functions/ unknown (See additional files for full details). (C) Graph representation of cluster ESI across the 186 fruit related tissues with an expression specificity index greater than 1, in fruit MCL clusters 102 (orange bar) and 11 (yellow bar). Red boxes highlight the expression specificity of fruit-specific cluster 102 and 11 members in fruit vesicles of various sweet orange cultivars.