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Table 4 Genetic diversity of flowering genes in Morocco and Iberia

From: The genetic structure of Arabidopsis thaliana in the south-western Mediterranean range reveals a shared history between North Africa and southern Europe

Gene Sequence length1 Genetic group2 Number of populations Number of polymorphisms3 N H 3 H S 3 R S 3 R P 3 π silent Haplogrups or truncations4 Haplogrup frequency (%)4
FRI 3470 M 20 24 16 0.049±0.011 1.18±0.03 0.092±0.022 0.0023 Yes 5
   IP 178 87 97 0.058±0.009 1.24±0.03 0.181±0.023 0.0023 Yes 12.2
   IP-1 111 69 54 0.059±0.009 1.24±0.03 0.079±0.011 0.0023 Yes 17.9
   IP-2 29 26 14 0.029±0.007 1.13±0.02 0.028±0.010 0.0010 Yes 6.5
   IP-3 24 35 22 0.055±0.011 1.21±0.03 0.098±0.018 0.0026 No 0
   IP-4 14 19 7 0.046±0.011 1.15±0.03 0.032±0.014 0.0019 No 0
FLC 451 M 20 4 5 0.126±0.058 1.31±0.13 0.314±0.135 0.0033 A 100
   IP 181 8 18 0.104±0.035 1.38±0.11 0.378±0.106 0.0039 A 100
   IP-1 112 7 8 0.081±0.032 1.31±0.11 0.144±0.092 0.0032 A 100
   IP-2 31 3 3 0.073±0.040 1.22±0.12 0.064±0.041 0.0022 A 100
   IP-3 24 4 4 0.047±0.028 1.19±0.09 0.083±0.072 0.0025 A 100
   IP-4 14 2 3 0.049±0.039 1.14±0.10 0.106±0.078 0.0027 A 100
CRY2 1529 M 20 8 6 0.104±0.036 1.29±0.09 0.210±0.078 0.0229 A, B B=5
   IP 181 19 24 0.054±0.023 1.20±0.06 0.139±0.047 0.0145 A, B B=9.9
   IP-1 112 10 8 0.037±0.021 1.13±0.05 0.029±0.011 0.0075 A, B B=3.6
   IP-2 31 5 5 0.033±0.022 1.10±0.05 0.031±0.021 0.0052 A, B B=3.2
   IP-3 24 7 8 0.052±0.024 1.18±0.07 0.162±0.064 0.0023 A 100
   IP-4 14 4 3 0.052±0.025 1.16±0.08 0.051±0.044 0.0229 A, B B=85.7
PHYC 868 M 19 6 7 0.065±0.033 1.24±0.11 0.121±0.059 0.0168 Ler, Col Col=5
   IP 160 18 34 0.062±0.024 1.23±0.06 0.141±0.036 0.0106 Ler, Col Col=7.4
   IP-1 102 13 15 0.061±0.024 1.23±0.06 0.090±0.032 0.0092 Ler, Col Col=6.9
   IP-2 30 3 4 0.026±0.018 1.09±0.05 0.032±0.029 0.0039 Ler 100
   IP-3 16 8 9 0.070±0.028 1.25±0.08 0.100±0.045 0.0158 Ler, Col Col=16.7
   IP-4 12 5 6 0.062±0.028 1.20±0.11 0.035±0.024 0.0148 Ler, Col Col=14.3
  1. For each gene, the following parameters are shown for Morocco, the Iberian Peninsula and the four Iberian genetic groups: number of polymorphisms, number of haplotypes (N H ), gene diversity (H S ), allelic richness (R S ), private allelic richness (R P ), silent nucleotide diversity (π silent ), and the type and frequency of major haplogroups or functional alleles. H S , R S and R P are mean values ± SE.
  2. 1: Alignment length of all sequences.
  3. 2: Genetic groups correspond to the four main Iberian groups detected with STRUCTURE; IP: Iberian Peninsula; M: Morocco.
  4. 3: Only polymorphisms that are not in complete LD are included.
  5. 4: Accessions are classified as functional and loss-of-function truncations for FRI[30] or as the two major functional haplogroups described for FLC, CRY2 and PHYC[5456]. Frequencies are given for truncations and for the minor frequency haplogroups.