Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

BMC Plant Biology

Table 1 Summary of sequencing samples and results

Tissue	Biological	Illumina GAll	Total reads	Mapped reads
	Replicates	Lanes sequenced		No	%
Internode explant	3	6	204, 768, 821	84,814, 829	41.4
Callus	3	6	214, 470, 025	48, 813, 758	22,8
Regenerated internode	3	3	147, 824, 747	35, 116, 532	23.8
Input	4	4	61, 453, 962	35, 116, 532	23.8
Totals	13	19	628, 517, 555	168,745, 119

Sequencing was performed on an Illumina GAIIx platform. Mapped reads include all non-clonal reads that aligned to unique loci on the reference genome, allowing up to two mismatches.

ISSN: 1471-2229