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Table 1 Gene association network generated by querying thylakoid ascorbate peroxidase (tAPX, AT1G77490) using the ALPINE tool

From: Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce

AT1G77490 thylakoidal ascorbate Plastid PlastidRedox.Ascorbate and Glutathione.Ascorbate 3.41 1.51E-04
AT4G39970 Haloacid dehalogenase‒like hydrolase (HAD) superfamily Plastid Not Assigned. No Ontology 2.53 1.15E-03
AT5G51820 phosphoglucomutase Plastid Glycolysis.Plastid Branch.Phosphoglucomutase 1.5 4.98E-02
AT4G27700 Rhodanese/Cell cycle control phosphatase superfamily Plastid Misc.Rhodanese 1.48 8.16E-03
AT1G04420 NAD(P)‒linked oxidoreductase superfamily protein Plastid Minor CHO Metabolism.Others 1.47 4.78E-04
AT5G27290 AT5G27290unknown protein Plastid Not Assigned.Unknown 1.36 4.71E-02
AT5G65220 AT5G65220Ribosomal L29 family protein Plastid Protein.Synthesis.Ribosomal Protein.Prokaryotic. −1.32 4.09E-02
AT4G21280 AT4G21280photosystem II subunit QA Plastid PS.Lightreaction.Photosystem II.PSII Polypeptide Subunits −1.33 1.45E-02
AT1G32550 2Fe‒2S ferredoxin‒like superfamily protein N/A Misc.Other Ferredoxins and Rieske Domain −1.33 4.95E-02
AT1G76450 Photosystem II reaction center PsbP family protein Plastid PS.Lightreaction.Photosystem II.PSII Polypeptide Subunits −1.37 1.34E-02
AT2G43560 FKBP‒like peptidyl‒prolyl cis‒trans isomerase family protein Plastid Protein.Folding −1.37 1.54E-02
AT3G52150 RNA‒binding (RRM/RBD/RNP motifs) family protein Plastid RNA.Regulation of Transcription.Unclassified −1.41 2.59E-02
AT3G18890 NAD(P)‒binding Rossmann‒fold superfamily protein Plastid Signalling.Light −1.45 2.02E-02
AT3G51510 unknown protein Plastid Not Assigned.Unknown −1.46 1.54E-02
AT1G48350 Ribosomal L18p/L5e family protein Plastid Protein.Synthesis.Ribosomal Protein.Prokaryotic.Chloroplast −1.46 1.54E-02
AT1G43670 Inositol monophosphatase family protein Membrane Metabolism.Synthesis.Sucrose.F −1.51 3.97E-02
AT1G75690 DnaJ/Hsp40 cysteine‒rich domain superfamily protein Plastid Protein.Folding −1.6 4.19E-02
AT5G14910 Heavy metal transport/detoxification Plastid Not Assigned.No Ontology −1.62 3.44E-02
AT1G21350 Thioredoxin super family protein Plastid Not Assigned.Unknown −1.63 1.33E-02
AT5G13510 Ribosomal protein L10 family protein Plastid Protein.Synthesis.Ribosomal Protein.Prokaryotic. −1.69 3.43E-05
AT3G48420 Haloacid dehalogenase‒like hydrolase (HAD) superfamily Plastid Not Assigned.Unknown −1.7 2.50E-02
AT1G16080 unknown protein Plastid Not Assigned.Unknown −1.73 4.36E-03
AT4G09650 ATP SYNTHASE DELTA‒SUBUNIT; hydrogen ion Plastid Not Assigned.Unknown −1.9 3.44E-04
AT3G54210 Ribosomal protein L17 family protein Plastid Protein.Synthesis.Ribosomal Protein.Prokaryotic.Chloroplast. −1.92 4.44E-04
AT3G61870 unknown protein Plastid Not Assigned.Unknown −2.06 2.71E-03
AT5G52970 thylakoid lumen 15.0 kDa protein Plastid Not Assigned.No Ontology −2.06 4.12E-04
AT4G01310 Ribosomal L5P family protein Plastid Protein.Synthesis.Ribosomal Protein.Prokaryotic. −2.42 8.36E-04
AT5G42070 unknown protein Plastid Not Assigned.Unknown −3.01 2.08E-05
  1. All associations were found to be co-expression associations, and all 28 genes in the network demonstrate a significant (q <0.05) expression value in T5 of the dataset.