Common bean (Phaseolus vulgarisL.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency

Aparicio-Fabre, Rosaura; Guillén, Gabriel; Loredo, Montserrat; Arellano, Jesús; Valdés-López, Oswaldo; Ramírez, Mario; Íñiguez, Luis P; Panzeri, Dario; Castiglioni, Bianca; Cremonesi, Paola; Strozzi, Francesco; Stella, Alessandra; Girard, Lourdes; Sparvoli, Francesca; Hernández, Georgina

doi:10.1186/1471-2229-13-26

Table 1 Selected P-responsive genes identified by microarray analysis

From: Common bean (Phaseolus vulgarisL.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency

			Normalized fold change (log 2) -P/C
Gene	BinName	ID a	EV	PvTIFY-RNAi	PvTIFY-OE
Induced in control roots and repressed in PvTIFY-RNAi roots
Cell wall invertase	Major CHO	TC8333	0.132	−0.076	0.196
Seed imbibition, hydrolase	Minor CHO	EC997013, CV535625, EC911359	0.158	−0.053	0.160
Phosphoenolpyruvate carboxylase	Gluconeogenesis/ glyoxylate cycle	TC12305, FE897651, FE711062	0.140	−0.120	0.069
Malic enzyme	TCA / org. Transformation	TC19528	0.120	−0.038	0.122
Alanine-glyoxylate transaminase	Amino acid metabolism	EC911309, CV537351, TC15378	0.112	−0.095	0.189
Inorganic diphosphatase/ pyrophosphatase	Nucleotide metabolism	TC9801	0.102	−0.021	0.099
Signal transducer/ triacylglycerol lipase	Stress	TC13450	0.108	−0.067	0.113
Cold regulated 413 plasma membrane 1	Stress	TC17916	0.164	−0.012	0.151
Trypsin and protease inhibitor family protein	Stress	TC10263	0.142	−0.010	0.413
Cytochrome P450 /CYP705A2)	Miscellaneous enzyme families	TC17341	0.149	−0.024	0.125
Glutathione S-transferase	Miscellaneous enzyme families	TC14044	0.199	−0.023	0.375
inositol-polyphosphate 5-phosphatase	DNA	TC17029, TC18885	0.145	−0.002	0.064
CCAAT-binding transcription factor (CBF-B/NF-YA) family protein	RNA	TC11100	0.102	−0.036	0.057
AP2 domain-containing TF	RNA	TC17374	0.103	−0.046	0.123
Homeobox protein 6	RNA	TC18879	0.120	−0.023	0.058
Protein phosphatase 2C, putative	Protein	TC8583	0.110	−0.045	0.045
Protein kinase 2A	Protein	TC8739	0.113	−0.016	0.086
ATPase, coupled to transmembrane movement of substances	Transport	TC15570, TC9579	0.120	−0.028	0.153
Putative phosphate transporter 1 (PHO1)	Transport	CV543807	0.105	−0.015	0.022
Hypersensitive-induced response protein	Transport	TC10794	0.145	−0.031	0.181
Repressed in control roots and induced in PvTIFY-RNAi roots
Fasciclin-like arabinogalactan protein, putative	Cell wall	TC8476	−0.095	0.180	−0.042
Xyloglucan endotransglucosylase/hydrolase 9	Cell wall	TC12404	−0.102	0.047	−0.057
Acetoacetyl-coa thiolase	Lipid metabolism	TC9630	−0.101	0.064	−0.152
Lipid-transfer protein, non-specific	Lipid metabolism	FE898308	−0.109	0.005	−0.025
delta-8 sphingolipid desaturase	Lipid metabolism	TC15181	−0.050	0.127	−0.118
Ovule/fiber cell elongation protein	Hormone metabolism	TC18895	−0.105	0.108	−0.142
GAST1 Protein homolog 4	Hormone metabolism	TC18314	−0.143	0.146	−0.097
Histone H4	DNA	TC14696	−0.101	0.088	−0.234
Histone H3	DNA	TC13898	−0.106	0.099	−0.186
ATHB13; DNA binding / transcription factor	RNA	TC15258	−0.122	0.047	−0.125
MYB, transcription factor	RNA	BQ481439	−0.187	0.017	−0.022
DNA binding / transcription factor	RNA	TC15305	−0.102	0.002	−0.069
Y14 RNA binding protein	RNA	CV538348	−0.101	0.022	−0.007
Remorin family protein	RNA	TC18087	−0.103	0.007	−0.012
Eukaryotic translation initiation factor 4 F, putative	Protein	TC13072	−0.100	0.004	−0.102
60S ribosomal protein L14 (RPL14B) \|	Protein	TC14174, TC17981, TC12005, TC10014, TC12381	−0.095	0.130	−0.397
Receptor-like protein kinase-related	Signaling	CV532262	−0.116	0.004	−0.077
RKL1 (Receptor-like kinase 1)	Signaling	TC11321	−0.107	0.105	−0.234
RHO-Like GTP binding protein 4	Signaling	TC18636	−0.124	0.039	−0.057
Calreticulin 2	Signaling	TC16682	−0.004	0.107	−0.167

a. From bean gene index [46], ESTs encoded by the same gene present in the microarray and with similar differential expression are shown.

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