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Table 1 Summary of sequences obtained

From: Identification of functional cis-regulatory elements by sequential enrichment from a randomized synthetic DNA library

 

Non-redundant data set

Clustering

 

Samples

N

N filtered*

N° non-redundant

% unique

N°

% clustered

  

sequences

sequences

sequences

sequences

clusters

sequences

Libraries

Sample 1

958.534

646.511

645.835

99,9

645.835

0

Sample 2

392.428

259.149

234.498

90,5

231.838

1,1

Sample 3

370.017

248.009

227.334

91,7

225.081

0,9

II ChIP

Sample 4

481.873

299.152

82.834

27,7

44.055

46,8

Sample 5

435.942

280.944

84.627

30,1

47.345

44,1

Sample 8

308.053

201.329

66.654

33,1

38.251

42,6

III ChIP

Sample 6

510.785

312.151

71.701

22,9

39.151

45,4

Sample 7

234.235

159.607

42.234

26,5

22.758

46,1

  1. The number (N°) of total sequences, the number of filtered sequences, the non-redundant sequence data set and the clustering sequence data obtained for the main- (Sample 1) and the two sub-libraries (Samples 2 +3), and following two rounds (II ChIP) or three rounds (III ChIP) of chromatin immunoprecipitation for the indicated samples. Asterisk denotes the number of filtered sequences that exactly matched the experimentally designed sequence pattern.
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BMC Plant Biology

ISSN: 1471-2229

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