| |
Non-redundant data set
|
Clustering
|
|---|
| |
Samples
|
N
|
N filtered*
|
N° non-redundant
|
% unique
|
N°
|
% clustered
|
|---|
| | |
sequences
|
sequences
|
sequences
|
sequences
|
clusters
|
sequences
|
|---|
|
Libraries
|
Sample 1
|
958.534
|
646.511
|
645.835
|
99,9
|
645.835
|
0
|
|
Sample 2
|
392.428
|
259.149
|
234.498
|
90,5
|
231.838
|
1,1
|
|
Sample 3
|
370.017
|
248.009
|
227.334
|
91,7
|
225.081
|
0,9
|
|
II ChIP
|
Sample 4
|
481.873
|
299.152
|
82.834
|
27,7
|
44.055
|
46,8
|
|
Sample 5
|
435.942
|
280.944
|
84.627
|
30,1
|
47.345
|
44,1
|
|
Sample 8
|
308.053
|
201.329
|
66.654
|
33,1
|
38.251
|
42,6
|
|
III ChIP
|
Sample 6
|
510.785
|
312.151
|
71.701
|
22,9
|
39.151
|
45,4
|
|
Sample 7
|
234.235
|
159.607
|
42.234
|
26,5
|
22.758
|
46,1
|
- The number (N°) of total sequences, the number of filtered sequences, the non-redundant sequence data set and the clustering sequence data obtained for the main- (Sample 1) and the two sub-libraries (Samples 2 +3), and following two rounds (II ChIP) or three rounds (III ChIP) of chromatin immunoprecipitation for the indicated samples. Asterisk denotes the number of filtered sequences that exactly matched the experimentally designed sequence pattern.
