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Table 1 Differentially transcribed genes implicated in epigenetic regulation

From: Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster

Cluster

Gene ID

Ppunigene

AtLocus

E-value

Annotation

1

6.2.9.22

732

AT1G08460

2E-141

Histone deacetylase 8 (HDA8)

1

3.1.21.21

1009

AT3G44680

0

Histone deacetylase 9 (HDA9)

1

9.3.15.18

25311

AT1G09700

2E-43

dsRNA-binding protein 1 (DRB1), HYPONASTIC LEAVES 1 (HYL1)

1

2.2.5.12

38

AT1G48410

0

ARGONAUTE 1 (AGO1)

1

9.4.14.10

9118

AT1G48410

0

ARGONAUTE 1 (AGO1)

1

1.4.19.11

5048

AT5G21150

3E-109

ARGONAUTE 9 (AGO9)

1

7.2.18.7

3877

AT2G23380

2E-151

CURLY LEAF (CLF), INCURVATA 1 (ICU1), SDG1, SET1

1

1.2.3.11

401

AT5G22750

2E-155

DNA/RNA helicase protein RAD5

1

2.2.17.8

62665

AT3G20550

6E-84

SMAD/FHA domain-containing protein DAWDLE, DDL

1

9.3.17.23

15368

AT5G14170

1E-164

SWIB/MDM2 domain superfamily protein CHC1

1

4.1.9.18

60482

AT5G14170

1E-164

SWIB/MDM2 domain superfamily protein CHC1

2

10.2.21.21

28419

AT1G01040

0

ABNORMAL SUSPENSOR 1 (ASU1), CARPEL FACTORY (CAF), DCL1,

     

DICER-LIKE1 (DCL1), EMBRYO DEFECTIVE 60 / 76 (EMB60 / 76),

     

SHORT INTEGUMENTS 1 (SIN1), SUSPENSOR 1 (SUS1)

3

10.2.13.22

1158

AT1G77300

5E-27

H3-K4 specific histone methyltransferases, ASH1 HOMOLOG 2 (ASHH2)

3

4.4.11.7

441, 7804

AT4G38040

7E-150

Exostosin family protein

3

8.4.10.21

7514

AT3G17590

3E-75

Transcription regulatory protein SNF5 homologue, BUSHY GROWTH (BSH)

4

5.3.8.1

17585

AT5G03740

4E-19

Histone deacetylase 2C (HD2C)

4

7.1.7.5

18705

AT1G77540

5E-30

H3/H4 histone acyl-CoA N-acyltransferase

4

1.4.19.18

25013

AT2G47210

4E-124

myb-like transcription factor family protein

4

1.3.3.10

2926

AT5G66750

0

CHROMATIN REMODELLING 1 (CHR1), DECREASED DNA

     

METHYLATION 1 (DDM1), SOMNIFEROUS 1 (SOM1)

4

8.2.9.24

4432

AT4G16280

9E-73

RNA-mediated chromating silencing protein, FLOWERING TIME CONTROL

     

PROTEIN FCA

4

6.4.2.10

5264

AT3G57300

1E-157

INO80 ortholog

5

8.1.4.5

739, 26140

AT1G57820

0

Zinc C3HC4-type RING finger protein, ORTH2, VARIANT IN

     

METHYLATION 1 (VIM1)

6

11.2.17.19

19820

AT5G26040

5E-136

Histone deacetylase 2 (HDA2)

6

2.3.12.22

3694

AT5G04940

5E-123

SU(VAR)3-9 homolog 1 (SUVH1)

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BMC Plant Biology

ISSN: 1471-2229

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