Table 1 Raw and clean read statistics of small RNAs
UF | RF | NON | JON | NOFF | JOFF | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Count | % | Count | % | Count | % | Count | % | Count | % | Count | % | |
total_reads | 15,364,727 | 13,895,311 | 15,310,134 | 17,043,189 | 15,849,260 | 16,064,294 | ||||||
high_quality | 15,340,544 | 100 | 13,868,830 | 100 | 15,288,291 | 100 | 17,018,648 | 100 | 15,825,515 | 100 | 16,041,414 | 100 |
3’adapter_null | 4,407 | 0.03 | 4,141 | 0.03 | 3,703 | 0.02 | 3,941 | 0.02 | 4,334 | 0.03 | 3,937 | 0.02 |
insert_null | 6,029 | 0.04 | 1,148 | 0.01 | 3,681 | 0.02 | 2,750 | 0.02 | 2,995 | 0.02 | 4,423 | 0.03 |
5’adapter_contaminants | 46,316 | 0.30 | 12,104 | 0.09 | 93,196 | 0.61 | 18,866 | 0.11 | 4,0797 | 0.26 | 38,204 | 0.24 |
smaller_than_18nt | 23,051 | 0.15 | 33,526 | 0.24 | 32,945 | 0.22 | 42,170 | 0.25 | 66,057 | 0.42 | 62,461 | 0.39 |
polyA | 727 | 0.00 | 590 | 0.00 | 1,298 | 0.01 | 712 | 0.00 | 911 | 0.01 | 529 | 0.00 |
clean_reads | 15,260,014 | 99.48 | 13,817,321 | 99.63 | 15,153,468 | 99.12 | 16,950,209 | 99.60 | 15,710,421 | 99.27 | 15,931,860 | 99.32 |