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Table 2 Homologous TDFs with high sequence similarity

From: Genome-wide identification of differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.)

  Hypothetical 1 Hypothetical 2 M6PIa PIP1b SOD CCc
  01E01 02 C11 A02C03 A04H02 05 C11 08D03 06 C03 06E09 A04A08 A04G04
MseI/TaqI* AC/TC TC/TC TG/CA CT/CA GT/AG GT/AC GT/AG TG/AG TC/CA AC/CA
bp% 223 223 206 342 221 215 537 274 334 310
Expression dn L dn R dn R up R up R up R up R up L up R dn L
  dn R        dn R   
Similarity to AD genomes§ 100% A 95% A 98% Gh 99% Gh 98% Gh 99% Gh 99% A 99% A   
  98% D 97% D      98% D 98% D 100% Gh 100% Gh
  100% Gh 98% Gh      99% Gh 99% Gh 100% Gb 100% Gb
  100% Gb 98% Gb      99% Gb 99% Gb   
  1. aMannose 6 phosphate isomerase; bplasma membrane intrinsic protein 1; csuperoxide dismutase copper chaperone.
  2. *Two nucleotide extensions at 3’-termini of each selective primer set.
  3. %Sizes of cDNA-AFLP bands.
  4. up and dn represent up-regulation and down-regulation, respectively in root (R) and leaf (L) tissues.
  5. §Genomes from Gossypium arboreum (A), Gossypium raimondii (D), Gossypium hirsutum (Gh), and Gossypium barbadense (Gb).