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Table 2 Single nucleotide polymorphism (SNP) marker loci significantly associated with flowering time (FT), northern corn leaf blight (NCLB), and FT corrected NCLB (NCLB FT ) resistance for the entire set of 1487 maize inbred lines as identified by single marker analysis

From: Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set

  Marker   Chr. Position Position   Allele Effect p G
Trait locus Gene bin (cM) (bp) P value 1/2 Allele 1-2 (%)
FT M_00048149 LE00126 8.05 187.40 128429853 1.5e-06** G/A 1.66 10.72
  M_00041827 AY104033 8.05 188.17 130730508 6.8e-08** C/T 2.21 9.75
  M_00041828 AY104033 8.05 188.17 130730581 6.6e-08** C/T 2.21 9.81
  M_00044984 CL4016 8.05 191.34 131678990 3.8e-06** T/C 1.49 6.34
  M_00044985 CL4016 8.05 191.34 131678953 8.7e-06* A/G 1.43 5.39
  M_00049486 LE00214 8.05 197.92 145084250 3.0e-08** C/T -2.03 14.29
  M_00049487 LE00214 8.05 197.92 145084209 3.4e-07** C/A -1.66 9.10
  Simultaneous fit         13.20
NCLB M_00040077 AY105483 2.08 343.92 217079800 1.4e-05* G/A -0.54 3.32
  M_00041320 AY112216 5.03 185.02 67600206 1.3e-05* C/T -0.50 3.58
  M_00043741 AY111579 6.05 146.44 145332550 1.3e-05* C/T 0.61 4.27
  M_00048400 LE00018 7.02 178.00 100239763 3.3e-06** T/C -0.47 4.78
  Simultaneous fit         8.18
NCLB FT M_00045254 AY107778 7.04 391.46 169937062 2.4e-07** T/C -1.89 0.36
  M_00041355 AY107035 9.03 99.76 43679500 1.4e-05* A/C -0.58 6.76
  M_00041356 AY107035 9.03 99.76 43679530 9.3e-06* G/A -0.58 6.66
  M_00039528 AY104217 9.05 174.09 135147555 9.1e-06* A/G -0.72 4.04
  Simultaneous fit         9.48
  1. pG is the proportion of the explained genotypic variance.
  2. *Significant at P < 0.05 with amplicon-wise Bonferroni correction.
  3. **Significant at P < 0.05 with Bonferroni correction.