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Table 2 Single nucleotide polymorphism (SNP) marker loci significantly associated with flowering time (FT), northern corn leaf blight (NCLB), and FT corrected NCLB (NCLB FT ) resistance for the entire set of 1487 maize inbred lines as identified by single marker analysis

From: Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set

 

Marker

 

Chr.

Position

Position

 

Allele

Effect

p G

Trait

locus

Gene

bin

(cM)

(bp)

P value

1/2

Allele 1-2

(%)

FT

M_00048149

LE00126

8.05

187.40

128429853

1.5e-06**

G/A

1.66

10.72

 

M_00041827

AY104033

8.05

188.17

130730508

6.8e-08**

C/T

2.21

9.75

 

M_00041828

AY104033

8.05

188.17

130730581

6.6e-08**

C/T

2.21

9.81

 

M_00044984

CL4016

8.05

191.34

131678990

3.8e-06**

T/C

1.49

6.34

 

M_00044985

CL4016

8.05

191.34

131678953

8.7e-06*

A/G

1.43

5.39

 

M_00049486

LE00214

8.05

197.92

145084250

3.0e-08**

C/T

-2.03

14.29

 

M_00049487

LE00214

8.05

197.92

145084209

3.4e-07**

C/A

-1.66

9.10

 

Simultaneous fit

       

13.20

NCLB

M_00040077

AY105483

2.08

343.92

217079800

1.4e-05*

G/A

-0.54

3.32

 

M_00041320

AY112216

5.03

185.02

67600206

1.3e-05*

C/T

-0.50

3.58

 

M_00043741

AY111579

6.05

146.44

145332550

1.3e-05*

C/T

0.61

4.27

 

M_00048400

LE00018

7.02

178.00

100239763

3.3e-06**

T/C

-0.47

4.78

 

Simultaneous fit

       

8.18

NCLB FT

M_00045254

AY107778

7.04

391.46

169937062

2.4e-07**

T/C

-1.89

0.36

 

M_00041355

AY107035

9.03

99.76

43679500

1.4e-05*

A/C

-0.58

6.76

 

M_00041356

AY107035

9.03

99.76

43679530

9.3e-06*

G/A

-0.58

6.66

 

M_00039528

AY104217

9.05

174.09

135147555

9.1e-06*

A/G

-0.72

4.04

 

Simultaneous fit

       

9.48

  1. pG is the proportion of the explained genotypic variance.
  2. *Significant at P < 0.05 with amplicon-wise Bonferroni correction.
  3. **Significant at P < 0.05 with Bonferroni correction.