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Table 3 The family of Deg/HtrA proteases in Oryza sativa

From: The family of Deg/HtrA proteases in plants

Gene modela Previouis protein nameb UniProtKB acc. no.c aa Domain arrangementd Orthologs in other plants (this study) Proposed protein name
Os01g0278600 LOC_Os01g17070 Os01g0278600 OsDegP1 Q5NBK7 470 PDia-PDZ n.a. OsDeg-like 1
Os02g0712000 LOC_Os02g48180 Os02g0712000 OsDegP2 Q6ZIR2/B9F2C1 1092e PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Pp1s237_5V6 Pp1s21_327V6 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720 OsDeg7
Os02g0742500 LOC_Os02g50880 Os02g0742500 OsDegP3 Q6Z806 567 PD-PDZ-PDZ At5g40200 Cre19.g752200 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440 OsDeg9.1
-LOC_Os03g62900 -OsDegP4 Q84SQ1 299 PD n.a. – not a Deg? OsDeg-like 6
Os04g0459900 LOC_Os04g38640 Os04g0459900 OsDegP5 B7EBF9 445 PD-PDZ At5g39830 Cre01.g028350 Pp1s31_50V6 POPTR_0004s13440 OsDeg8
Os05g0147500 LOC_Os05g05480 Os05g0147500 OsDegP6 Q6ASR0 596 PD-PDZ-PDZ At2g47940 Cre19.g752200 Pp1s8_140V6 POPTR_0014s12970 POPTR_0020s00220 OsDeg2
Os05g0417100 LOC_Os05g34460 Os05g0417100 OsDegP7 Q6AT72 614 PD-PDZ-PDZ At5g36950 Cre01.g013300 Cre14.g617600 Pp1s55_7V5.1 POPTR_0008s07940 OsDeg10
Os05g0497700 LOC_Os05g41810 Os05g0497700 OsDegP8 Q0DH14 722e NT-PD At1g28320 Cre12.g548200 Pp1s196_28V6 POPTR_0004s04650 POPTR_0011s05510 OsDeg15
Os05g0568900 LOC_Os05g49380 Os05g0568900 OsDegP9 Q6AUN5 437 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Pp1s160_79V6 Pp1s198_100V6 POPTR_0001s34960 OsDeg1
Os06g0234100 LOC_Os06g12780 Os06g0234100 OsDegP10 Q67VA4 628 PD-PDZ-PDZ At5g40200 Cre19.g752200 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440 OsDeg9.2
Os08g0144400 LOC_Os08g04920 Os08g0144400 OsDegP11 Q7EYD8 496 NT-PDia-PDZf n.a. OsDeg-like 2
Os11g0246600 LOC_Os11g14170 Os11g0246600 OsDegP12 Q0ITK5 472e PD-PDZ At5g27660 Pp1s180_15V6 POPTR_0013s01900 OsDeg14
Os12g0141500 LOC_Os12g04740 Os12g0141500 OsDegP13 Q2QXV8 228 PD n.a. – not a Deg? OsDeg-like 3
Os12g0141600 LOC_Os12g04750 Os12g0141600 OsDegP14 Q2QXV6 593 PDia-PDia n.a. OsDeg-like 4
Os12g0616600 LOC_Os12g42210 Os12g0616600 OsDegP15 Q2QM57 313 PD At4g18370 Cre02.g110600 Pp1s63_95V6 POPTR_0011s02330 OsDeg5
Os03g0608600 LOC_Os03g41170 Os03g0608600 expr. protein Q75HK9 271 PD n.a. – not a Deg? OsDeg-like 5
  1. a First model identifier from the Rice Annotation Project (Build5), second identifier according to the TIGR/MSU nomenclature (Osa1 Release 6.1). b First name according to GenBank/UnitProtKB, second identifier according to the TIGR/MSU nomenclature. c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PDia: inactive protease domain (i.e. at least one residue of the catalytic triad is mutated); PDZ, PDZ domain. e Sequence was modified based on the EST data (http://compbio.dfci.harvard.edu/tgi/plant.html) and comparison with orthologs from other species. f The HHPred platform detects secondary structures similar to RNA polymerase II large subunit from Saccharomyces cerevisiae in the N-terminal part of the protein – this is an indication that the predicted transcription start is incorrectly annotated.