The family of Deg/HtrA proteases in plants

Schuhmann, Holger; Huesgen, Pitter F; Adamska, Iwona

doi:10.1186/1471-2229-12-52

BMC Plant Biology

Table 3 The family of Deg/HtrA proteases in Oryza sativa

From: The family of Deg/HtrA proteases in plants

Gene model^a	Previouis protein name^b	UniProtKB acc. no.^c	aa	Domain arrangement^d	Orthologs in other plants (this study)	Proposed protein name
Os01g0278600 LOC_Os01g17070	Os01g0278600 OsDegP1	Q5NBK7	470	PD_ia-PDZ	n.a.	OsDeg-like 1
Os02g0712000 LOC_Os02g48180	Os02g0712000 OsDegP2	Q6ZIR2/B9F2C1	1092^e	PD-PDZ-PDZ- PD_ia-PDZ-PDZ	At3g03380 Cre03.g180650 Pp1s237_5V6 Pp1s21_327V6 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720	OsDeg7
Os02g0742500 LOC_Os02g50880	Os02g0742500 OsDegP3	Q6Z806	567	PD-PDZ-PDZ	At5g40200 Cre19.g752200 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440	OsDeg9.1
-LOC_Os03g62900	-OsDegP4	Q84SQ1	299	PD	n.a. – not a Deg?	OsDeg-like 6
Os04g0459900 LOC_Os04g38640	Os04g0459900 OsDegP5	B7EBF9	445	PD-PDZ	At5g39830 Cre01.g028350 Pp1s31_50V6 POPTR_0004s13440	OsDeg8
Os05g0147500 LOC_Os05g05480	Os05g0147500 OsDegP6	Q6ASR0	596	PD-PDZ-PDZ	At2g47940 Cre19.g752200 Pp1s8_140V6 POPTR_0014s12970 POPTR_0020s00220	OsDeg2
Os05g0417100 LOC_Os05g34460	Os05g0417100 OsDegP7	Q6AT72	614	PD-PDZ-PDZ	At5g36950 Cre01.g013300 Cre14.g617600 Pp1s55_7V5.1 POPTR_0008s07940	OsDeg10
Os05g0497700 LOC_Os05g41810	Os05g0497700 OsDegP8	Q0DH14	722^e	NT-PD	At1g28320 Cre12.g548200 Pp1s196_28V6 POPTR_0004s04650 POPTR_0011s05510	OsDeg15
Os05g0568900 LOC_Os05g49380	Os05g0568900 OsDegP9	Q6AUN5	437	PD-PDZ	At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Pp1s160_79V6 Pp1s198_100V6 POPTR_0001s34960	OsDeg1
Os06g0234100 LOC_Os06g12780	Os06g0234100 OsDegP10	Q67VA4	628	PD-PDZ-PDZ	At5g40200 Cre19.g752200 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440	OsDeg9.2
Os08g0144400 LOC_Os08g04920	Os08g0144400 OsDegP11	Q7EYD8	496	NT-PD_ia-PDZ^f	n.a.	OsDeg-like 2
Os11g0246600 LOC_Os11g14170	Os11g0246600 OsDegP12	Q0ITK5	472^e	PD-PDZ	At5g27660 Pp1s180_15V6 POPTR_0013s01900	OsDeg14
Os12g0141500 LOC_Os12g04740	Os12g0141500 OsDegP13	Q2QXV8	228	PD	n.a. – not a Deg?	OsDeg-like 3
Os12g0141600 LOC_Os12g04750	Os12g0141600 OsDegP14	Q2QXV6	593	PD_ia-PD_ia	n.a.	OsDeg-like 4
Os12g0616600 LOC_Os12g42210	Os12g0616600 OsDegP15	Q2QM57	313	PD	At4g18370 Cre02.g110600 Pp1s63_95V6 POPTR_0011s02330	OsDeg5
Os03g0608600 LOC_Os03g41170	Os03g0608600 expr. protein	Q75HK9	271	PD	n.a. – not a Deg?	OsDeg-like 5

^a First model identifier from the Rice Annotation Project (Build5), second identifier according to the TIGR/MSU nomenclature (Osa1 Release 6.1). ^b First name according to GenBank/UnitProtKB, second identifier according to the TIGR/MSU nomenclature. ^c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). ^d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PD_ia: inactive protease domain (i.e. at least one residue of the catalytic triad is mutated); PDZ, PDZ domain. ^e Sequence was modified based on the EST data (http://compbio.dfci.harvard.edu/tgi/plant.html) and comparison with orthologs from other species. ^f The HHPred platform detects secondary structures similar to RNA polymerase II large subunit from Saccharomyces cerevisiae in the N-terminal part of the protein – this is an indication that the predicted transcription start is incorrectly annotated.

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ISSN: 1471-2229

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