Table 2 Summary of microsatellite repeats in unique 'Bluecrop' ESTs
Repeats | Count | Percent of Category | Percent of Total |
|---|---|---|---|
DNR | 7942 | 50.0 | 9.1 |
TNR | 4120 | 25.9 | 4.7 |
TetraNR | 2274 | 14.3 | 2.6 |
PentaNR | 1550 | 9.8 | 1.8 |
Total No. of SSRs | 15886 | - | 18.2 |
Dinucleotide Repeats | Â | Â | Â |
CG/GC | 31 | 0.4% | 0.2% |
TG/GT/AC/CA | 530 | 6.7% | 3.3% |
AT/TA | 1347 | 17.0% | 8.5% |
AG/GA/TC/CT | 6034 | 76.0% | 38.0% |
Total Dinucleotide Repeats | 7942 | Â | 50.0% |
Trinucleotide Repeats | Â | Â | Â |
AAC/CAA/ACA/GTT/TTG/TGT | 177 | 4.3% | 1.1% |
AAG/GAA/AGA/CTT/TTC/TCT | 1310 | 31.8% | 8.2% |
AAT/TAA/ATA/ATT/TTA/TAT | 305 | 7.4% | 1.9% |
ACC/CAC/CCA/GGT/GTG/TGG | 600 | 14.6% | 3.8% |
ACG/CGA/GAC/CGT/GTC/TCG | 159 | 3.9% | 1.0% |
ACT/CTA/TAC/AGT/TAG/GTA | 246 | 6.0% | 1.5% |
AGC/CAG/GCA/TGC/CTG/GCT | 426 | 10.3% | 2.7% |
AGG/GGA/GAG/TCC/CTC/CCT | 424 | 10.3% | 2.7% |
ATC/CAT/TCA/GAT/ATG/TGA | 327 | 7.9% | 2.1% |
CCG/CGC/GCC/GGC/GCG/CGG | 146 | 3.5% | 0.9% |
Total Trinucleotide Repeats | 4120 | Â | 25.9% |