Skip to main content

Table 3 MADCE analysis results of mapped microsatellites

From: Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids

Microsatellite

Allele size (bp)

Holiday (H) or Korona (K)

Allele Presence Absence segregation

Actual Ratio Cluster segregation

Mean values of RCs (Ratio Clusters)

Single dose ratio

Holiday

Ratio value

Korona Ratio value

Nr of doses present in Holiday

Nr of doses present in Korona

Holiday repulsion allele

Korona repulsion allele

Homoeologue

ARSFL010

 

234

H

1:1

 

0, 27

27

26

0

1

0

257

-

A

 

246

K

1:1

 

0, 16

16

0

18

0

1

-

286

A

 

248

H

1:1

 

0, 4

4

3

0

1

0

0

-

B

 

257

H

1:1

 

0, 15

15

12

0

1

0

234

-

A

 

269*

H, K

1:0

 

REF

REF

REF

REF

2

2

-

-

C\D

 

286

K

1:1

 

0, 4

4

0

4

0

1

-

246

A

UFFxa16H07

 
 

262

H, K

1:0

 

REF

REF

REF

REF

2

2

-

-

D

 

266

H, K

1:0

1:1

17, 39

17

42

14

2

1

-

268

A

 

268

K

1:1

 

0, 13

13

0

13

0

1

-

266

A

 

269

H, K

3:1

1:2:1

0, 9, 20

9

10

7

1

1

298

306

B

 

273

K

1:1

 

0, 9

9

0

8

0

1

-

287

C

 

279

H

1:0

1:1

10, 15

10, 15

22

0

2

0

279

-

C

 

287

K

1:1

 

0, 6

6

0

5

0

1

-

273

C

 

298

H

1:1

 

0, 3

3

3

0

1

0

269

-

B

 

306

K

1:1

 

0, 2

2

0

2

0

1

-

269

B

UAFv7500

 

330

K

1:1

 

0, 6

6

0

6

0

1

-

345

C

 

333

K

1:1

 

0, 3

3

0

3

0

1

-

342

B

 

336

H

1:1

 

0, 6

6

6

0

1

0

345

-

C

 

342

H, K

1:0

1:3:3:1

7,14,19,24

6

16

13

3

2

348

333,348

AB

 

345

H, K

3:1

1:2:1

0, 7, 13

7

7

7

1

1

336

330

C

 

348

H, K

1:0

1:2:1

13,18,24

6

17

17

3

3

342(A)

342(A)

A D

CO817823

 

193

H

1:1

 

0, 22

22

21

0

0

1

-

199

B

 

195

H, K

3:1

1:2:1

0, 16,28

16

17

14

1

1

216

203

C

 

199

H, K

3:1

1:2:1

0, 17,35

17

16

15

1

1

203

193

B

 

203

H, K

3:1

1:1:1:1

0, 9,14,24

9(K1C)14(H1B)

14

9

1

1

199

195

BC

 

207

H,K

1:0

1:1

8, 13

4

13

8

3

2

236

-

A D

 

209

K

1:1

 

0, 8

8

0

8

0

1

-

236

A

 

216

H

1:1

 

0, 6

6

6

0

1

0

195

-

C

 

236

H,K

3:1

1:2:1

0, 4, 7

4

4

4

1

1

207

209

A

CX661101

 

204*

H

1:0

 

9

9

15

0

2

0

-

-

C\D

 

212*

H,K

1:0

 

20

10

18

18

2

2

-

-

D\C

 

220

H

1:1

 

0, 8

8

7

0

1

0

223

-

B

 

221

H

1:1

 

0, 8

8

8

0

1

0

223

-

A

 

223

H,K

1:0

1:3:3:1

8,16,23,31

7

12

21

2

3

220(B)221(A)

224

AB

 

224

K

1:1

 

0, 9

9

0

11

0

1

-

223

A

  1. Repulsion alleles are given if not homozygous
  2. * Homoeologue assignment can be switched. REF = used as reference allele
Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us