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Table 2 Haplotypes detected with the sequence information of BnFLC.A10 from 24 B. napus accessions

From: A Tourist-like MITE insertion in the upstream region of the BnFLC.A10 gene is associated with vernalization requirement in rapeseed (Brassica napus L.)

Haplotype

Accession

Origin

Type

InDel

SNP

Day to flowering

    

I***

II*

IIIa

IV*

1*

2*

3*

4

5

6

 

HapI

Tapidor

France

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Apache

UK

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Bakow

Poland

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Bienvenu

France

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Brutor

France

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Casino

Sweden

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

 

Quinta

Germany

Winter

In

DEL

6

DEL

G

T

A

G

G

A

Non-flowering

HapII

Alto

Canada

Spring

DEL

DEL

6

DEL

G

T

A

G

G

A

62

 

Bullet

Canada

Spring

DEL

DEL

6

DEL

G

T

A

G

G

A

64

 

Comet

Denmark

Spring

DEL

DEL

6

DEL

G

T

A

G

G

A

70

 

GULLR

Sweden

Spring

DEL

DEL

6

DEL

G

T

A

G

G

A

75

 

Westar

Canada

Spring

DEL

DEL

6

DEL

G

T

A

G

G

A

50

HapIII

Qingyou2

China

Spring

DEL

In

6

DEL

G

T

A

G

G

A

63

HapIV

Erglu

Australia

Spring

DEL

In

7

In

A

C

T

G

G

A

69

HapV

Gānyou5

China

Semi-winter

DEL

In

7

In

A

C

T

A

C

G

64

 

Huashuang1

China

Semi-winter

DEL

In

7

In

A

C

T

A

C

G

72

 

Huāyou4

China

Semi-winter

DEL

In

7

In

A

C

T

A

C

G

63

 

Karoo

Australia

Spring

DEL

In

7

In

A

C

T

A

C

G

63

 

Suyou3

China

Semi-winter

DEL

In

7

In

A

C

T

A

C

G

60

 

Xiangyou13

China

Semi-winter

DEL

In

7

In

A

C

T

A

C

G

72

HapVI

Erra

Germany

Spring

DEL

In

10

In

A

C

T

A

C

G

70

 

Jiayou1

China

Spring

DEL

In

10

In

A

C

T

A

C

G

82

 

NingRS-1

China

Semi-winter

DEL

In

10

In

A

C

T

A

C

G

81

 

Ningyou7

China

Semi-winter

DEL

In

10

In

A

C

T

A

C

G

72

  1. Symbols * and *** represent p = 0.05 and 0.001 levels of significance of each site’s influence on flowering time.
  2. aThe repeats of the CTT motif in indel III; In = insertion; DEL = deletion.