Table 4 QTLs for tocopherols in K22/Dan340 population and related candidate genes
Trait | Populations | Chr | QTLa | PKb(cM) | Marker* interval | Genetic interval (cM) | Physical intervalc (Mb) | LOD | Ad | De | R2f(%) | Candidate gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
γT | 09BJF2:3 | 1 | qd1-2 | 131 | PZA02750.3-PHM2187.34 | 119.28-127.7 | 102.6-157.1 | 4.52 | −3.88 | 1.29 | 3.03 |  |
|  |  | 1 | qd1-1 | 167 | PZA02117.1-PHM4926.16 | 165.46-179.76 | 224.1-241.2 | 34.95 | −11.16 | 3.86 | 30.81 |  |
|  |  | 5 | qd5-1 | 98.5 | PZA02751.1-PZA02068.1 | 151.05-169.78 | 190.7-205.3 | 15.05 | −6.08 | −0.15 | 12.06 | VTE4 |
|  |  | 8 | qd8-1 | 81.6 | PZA02748.3-PZA02011.1 | 68.92-82.39 | 118.7-141.6 | 6.5 | 4.44 | −0.31 | 4.44 |  |
|  | 09HNF2:4 | 1 | qd1-1 | 167 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 13.1 | −10.53 | 2.7 | 23.5 |  |
|  | 10HBF2:4 | 1 | qd1-2 | 49.8 | PZA00887.1-PZA00358.12 | 38.74-49.57 | 11.0-19.0 | 5.31 | −3.43 | 1.27 | 5.38 |  |
|  |  | 1 | qd1-1 | 164 | PHM3690.23-kip1.3 | 158.46-190.8 | 218.1-256.5 | 24.31 | −6.25 | 0.47 | 32.63 |  |
|  |  | 2 | qd2-1 | 67.7 | PZA03228.4-PHM10404.8 | 54.47-70.52 | 20.1-40.5 | 3.79 | −1.82 | −0.5 | 4.06 |  |
|  |  | 5 | qd5-1 | 98.5 | PZA03161.1-PZA01265.1 | 144.6-163.15 | 186.5-202.0 | 14.35 | −4.45 | −1.39 | 18.2 | VTE4 |
αT | 09BJF2:3 | 5 | qd5-1 | 98.5 | PZA02751.1-PZA02068.1 | 151.05-169.78 | 190.7-205.3 | 21.88 | 3.58 | −0.17 | 52.75 | VTE4 |
|  |  | 8 | qd8-1 | 75.4 | PZB00592.1-PHM4203.11 | 76.29-77.22 | 125.3-134.9 | 3.71 | −1.36 | 0.59 | 5.01 |  |
| Â | 09HNF2:4 | 5 | qd5-1 | 96.5 | PZA02751.1-PZA02068.1 | 151.05-169.78 | 190.7-205.3 | 5.63 | 1.89 | 0.39 | 12.44 | VTE4 |
|  | 10HBF2:4 | 1 | qd1-1 | 169 | PHM3690.23-kip1.3 | 158.46-190.8 | 218.1-256.5 | 7.3 | −2.35 | 0.68 | 11.08 |  |
| Â | Â | 5 | qd5-1 | 101 | PZA03161.1-PZA02068.1 | 144.6-169.78 | 186.5-205.3 | 21.76 | 3.93 | 0.87 | 39.09 | VTE4 |
|  |  | 10 | qd10-1 | 30.1 | PZA01642.1-PZA00079.1 | 28.06-29.45 | 14.6-18.9 | 4.14 | 0.5 | −1.96 | 5.37 |  |
TT | 09BJF2:3 | 1 | qd1-3 | 106 | PZA02292.1-PZA01267.3 | 89.29-109.03 | 51.3-77.2 | 4.9 | −3.31 | −0.36 | 3.97 |  |
|  |  | 1 | qd1-1 | 167 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 42.07 | −12.34 | 3.42 | 50.67 |  |
|  |  | 5 | qd5-2 | 85.3 | PZA01779.1-PZA00643.13 | 103.8-107.1 | 82.0-91.8 | 6.16 | −2.22 | −2.63 | 5.66 | HPPD-5 |
|  |  | 5 | qd5-1 | 92.5 | PZA03161.1-PZA01265.1 | 144.6-163.15 | 186.5-202.0 | 7.54 | −3.29 | −1.53 | 6.22 | VTE4 |
|  | 09HNF2:4 | 1 | qd1-1 | 167 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 13.42 | −10.49 | 2.9 | 25.28 |  |
|  | 10HBF2:4 | 1 | qd1-4 | 49.8 | PZA00887.1-PZA00358.12 | 38.74-49.57 | 11.0-19.0 | 4.72 | −4.14 | 1.52 | 5.62 |  |
|  |  | 1 | qd1-1 | 164 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 24.13 | −8.54 | 1.2 | 42.48 |  |
|  |  | 2 | qd2-1 | 67.7 | PZA03228.4-PHM10404.8 | 54.47-70.52 | 20.1-40.5 | 3.74 | −2.95 | 0.69 | 4.71 |  |
α/γ | 09BJF2:3 | 1 | qd1-1 | 168 | PHM3690.23-PHM4926.16 | 158.46-179.76 | 218.1-241.2 | 24.2 | 0.3 | −0.15 | 26.67 |  |
|  |  | 5 | qd5-1 | 101 | PZA02751.1-PZA02068.1 | 151.05-169.78 | 190.7-205.3 | 24.26 | 0.33 | −0.09 | 28.18 | VTE4 |
|  |  | 8 | qd8-1 | 78.1 | PZB00592.1-LYCE.1 | 76.29-79.82 | 125.3-138.8 | 4.28 | −0.12 | −0.02 | 4.32 |  |
|  | 09HNF2:4 | 1 | qd1-1 | 167 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 9.8 | 0.68 | −0.31 | 17.94 |  |
|  |  | 5 | qd5-1 | 98.5 | PZA02751.1-PZA02068.1 | 151.05-169.78 | 190.7-205.3 | 5.47 | 0.59 | −0.31 | 10.56 | VTE4 |
|  | 10HBF2:4 | 1 | qd1-1 | 166 | PHM3690.23-PZB01647.1 | 158.46-174.76 | 218.1-231.7 | 3.61 | 0.46 | −0.15 | 4.71 |  |
|  |  | 5 | qd5-1 | 98.5 | PZA03161.1-PZA02068.1 | 144.6-169.78 | 186.5-205.3 | 26.84 | 1.2 | −0.22 | 51 | VTE4 |