Table 1 Overview of eQTL analysis results based on obtained population-wide gene expression profiles for potato tuber and leaf tissue
A | Â | Â | Â | Â | Â | Â |
|---|---|---|---|---|---|---|
Nr of QTLS per Feature* | 1 | 2 | 3 | 4 | 5 | Total nr of QTLs |
Nr of Features | 12331 | 2269 | 213 | 19 | 2 | 17594 |
B | Â | Â | Â | Â | Â | Â |
QTL Expl. Var. % | > 10% | > 20% | > 30% | > 50% | > 70% | > 90% |
Nr of QTLs Tuber | 12192 | 10974 | 7306 | 3930 | 1856 | 293 |
Cis (%) | 7550 (61.9) | 7243(66.0) | 5699 (78.0) | 3279 (83.4) | 1515 (81.6) | 248 (84.6) |
Trans (%) | 3629 (29.8) | 2792(25.4) | 935 (12.8) | 269 (6.8) | 127 (6.8) | 10 (3.4) |
Unknown (%) | 1013 (8.3) | 939 (8.6) | 672 (9.2) | 382 (9.7) | 214(11.5) | 35 (11.9) |
Nr of QTLs Leaf | 10745 | 9629 | 6644 | 3884 | 1897 | 388 |
Cis (%) | 7574 (70.5) | 7211 (74.9) | 5517 (83.0) | 3239 (83.4) | 1552 (81.8) | 297 (76.5) |
Trans (%) | 2180 (20.3) | 1536 (16.0) | 497 (7.5) | 255 (6.6) | 118 (6.2) | 27 (7.0) |
Unknown (%) | 991 (9.2) | 882 (9.2) | 630 (9.5) | 390 (10.0) | 227 (12.0) | 64 (16.5) |
C | Â | Â | Â | Â | Â | Â |
Tissue Comparison | Nr of eQTLs | Cis (%) | Trans (%) | Unknown (%) | Â | Â |
Leaf + Tuber eQTL | 5818 | 4929 (84.7) | 401 (6.9) | 488 (8.4) | Â | Â |
Leaf Unique eQTL | 5126 | 2839 (55.4) | 1784 (34.8) | 503 (9.8) | Â | Â |
Tuber unique eQTL | 6650 | 2882 (43.3) | 3243 (48.8) | 525 (7.9) | Â | Â |
Tissue dependent** | 1713 | 530 (30.9) | 977 (57.0) | 285 (12.0) | Â | Â |