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Table 2 List of NBS-LRR genes on the recently duplicated region and disease resistance QTL in the 2-Mb flanking regions of the recently duplicated regions in soybean

From: Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

Recent duplication ID

Duplication counterpart

Disease resistance QTL

NBS-LRR genes

 

Chromosome A

Chromosome A’

Chromosome A

Chromosome A’

Chromosome A’

Chromosome A’

 

Chr

Start

End

Chr

Start

End

    

10176681

Gm01

0.97

2.34

Gm09

39.67

40.82

SCN 19-3, SCN 20-3, SCN 21-2

Sclero 2-17, Sclero 3-12

Glyma01g01400, Glyma01g01420

Glyma09g34360, Glyma09g33570, Glyma09g34380

10176680

Gm01

5.04

13.07

Gm02

9.94

12.69

SCN 26-2

SDL2178, Phytoph 1-2

Glyma01g08640, Glyma01g05710

Glyma02g12300

10176678

Gm01

48.26

54.67

Gm11

1.06

6.86

Sclero 2-5, Sclero 3-4, Sclero 4-1, Sclero 5-3

8ra

Glyma01g37620, Glyma01g39000, Glyma01g39010

Glyma11g06260, Glyma11g03780, Glyma11g07680

22835159

Gm03

35.08

47.75

Gm19

37.95

50.53

Sclero 3-16, SDS 8-3

8ra, OCS-F, OCS-G, LMG7403, Sclero 2-20, Sclero 3-14, Sclero 5-12, Sclero 6-9

Glyma03g29270, Glyma03g29370

Glyma19g32150, Glyma19g32090, Glyma19g32110, Glyma19g32180, Glyma19g32080

8358327

Gm08

5.50

11.35

Gm05

30.61

37.28

OCS-G, Sclero 2-2, Sclero 3-2, Sclero 5-1, Sclero 6-2, SCN 29-5, SCN 29-6, SCN 29-7, SCN 30-3, SCN 1-1

LMG7403, Sclero 2-1, Sclero 3-1, Sclero 6-1

Glyma08g12990

Glyma05g29880

18934088

Gm09

32.76

36.86

Gm16

35.20

37.17

Sclero 2-16, Sclero 3-11, Sclero 4-7, Sclero 5-10

BSR 3-1, BSR 4-1, BSR 5-2, BSR 6-1, BSR 6-10, BSR 6-2, BSR 6-3, BSR 6-4, BSR 6-5, BSR 6-6, BSR 6-7, BSR 6-8, BSR 6-9, SCN 28-2, SCN 28-4, SCN 29-2, SCN 1-2, SCN 5-2

Glyma09g29050

Glyma16g33780, Glyma16g33920, Glyma16g34070, Glyma16g33910, Glyma16g34030, Glyma16g33680, Glyma16g32320, Glyma16g33610, Glyma16g34090, Glyma16g33590, Glyma16g33950, Glyma16g34000, Glyma16g33930, Glyma16g34110, Glyma16g33940

18934087

Gm09

42.53

46.38

Gm18

53.56

59.09

Sclero 2-18

Sclero 2-14, Sclero 3-10, Sclero 4-6, Sclero 5-9, Sclero 6-7, Mi 3-2, Mi 4-1, Mi 1-3, Mi 1-4, Mi 2-2, SCN 4-2

Glyma09g39410

Glyma18g46100, Glyma18g46050

18159398

Gm15

39.83

44.16

Gm13

28.75

30.20

Ma 2-2

Sclero 2-12, Sclero 3-9, Sclero 4-4, Sclero 5-6, Sclero 6-5, Ma 1-2, Mj 1-4

Glyma15g37080, Glyma15g36990, Glyma15g35920, Glyma15g37140, Glyma15g37790, Glyma15g35850, Glyma15g37340, Glyma15g37320, Glyma15g37290, Glyma15g36940, Glyma15g36930, Glyma15g37390, Glyma15g37310

Glyma13g25920, Glyma13g26380, Glyma13g26460, Glyma13g25950, Glyma13g25750, Glyma13g26250, Glyma13g26530, Glyma13g25970, Glyma13g26420, Glyma13g25780, Glyma13g26000, Glyma13g26310, Glyma13g26140, Glyma13g26230

11590712

Gm17

39.27

41.04

Gm14

5.85

7.94

Sclero 2-10, Sclero 3-7, Sclero 6-4

SCN 17-2, SCN 19-2

Glyma17g36400, Glyma17g36420

Glyma14g08700, Glyma14g08710

10856314

Gm20

33.04

44.67

Gm10

39.46

50.28

OCS-G, SDL2178, SDS 7-6

8ra, Sclero 2-22, Sclero 2-23, Sclero 2-24, Sclero 3-17, Sclero 3-18, Sclero 3-19, Sclero 4-10, Sclero 4-11, Sclero 5-14, Sclero 5-15, Sclero 5-16, Sclero 6-11, Sclero 6-12, Sclero 6-13

Glyma20g33530, Glyma20g33740, Glyma20g34860

Glyma10g32780, Glyma10g32800, Glyma10g34060

  1. * Chromosome A and A’ represent the recently duplicated region.
  2. ** Fungal resistance QTL: Sclerotinia stem rot (Sclero), Sudden death syndrome (SDS), Brown stem rot (BSR), Phytophthora sojae infection (Phytoph); Nematode resistance QTL: Soybean cyst nematode (SCN), Peanut root-knot nematode (Ma), Southern root-knot nematode (Mi), Javanese root-knot nematode (Mj); Bacterial leaf pustule resistance QTL (BLP): OCS-G, SDL2178, 8ra, OCS-F, LMG7403.