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Table 4 GeneChip array data analysis of the maize genes encoding the proteins identified by mass spectrometry.

From: Transcriptomic and proteomic profiling of maize embryos exposed to camptothecin

Spot ID Gene TBLASTN Affymetrix chip data
   GB# Score Probe Set ID Log2(R) p-value FDR
U1 Chloroplast Cu/Zn superoxide dismutase
   NM_001114655 0 Zm.9031.1.S1_at -0.19 0.18 0.74
U2 Cytosolic ascorbate peroxidase 1
   EU966070 1e-169 Zm.3633.8.A1_at 0.18 0.58 0.96
   n.d. 1e-163 Zm.3633.6.S1_at 0.23 0.42 0.92
   n.d. 1e-150 Zm.3633.8.S1_x_at 0.28 0.43 0.93
   n.d. 1e-144 Zm.3633.2.S1_x_at 0.01 0.93 1.00
   n.d. 1e-138 Zm.3633.3.S1_x_at 0.07 0.74 0.98
U3 Glutathione S-transferase GST19
   AF244684 0 Zm.548.1.S1_at 0.12 0.59 0.96
D3 26S proteasome non-ATPase regulatory subunit 4
   EU965376 0.00 Zm.5851.1.A1_at 0.15 0.12 0.64
   n.d. 1e-32 Zm.7644.2.S1_x_at 0.18 0.29 0.85
U2 26S proteasome non-ATPase regulatory subunit 8
   EU968302 1e-154 Zm.6666.1.S1_at -0.11 0.52 0.95
   n.d. 4e-97 Zm.6666.2.S1_at -0.02 0.91 1.00
D4 Eukaryotic translation initiation factor eIF-5A
   Y07920 0.00 Zm.1314.1.A1_at 0.10 0.29 0.85
   n.d. 0.00 Zm.3545.1.A1_at 0.14 0.14 0.68
D5 Eukaryotic translation initiation factor eIF-6
   EU961480 0.00 Zm.7096.1.A1_at 0.13 0.50 0.94
D10 Glyceraldehyde-3-phosphate dehydrogenase
   X07156 0.00 Zm.3765.1.S1_s_at 0.08 0.52 0.95
   n.d. 0.00 AFFX-Zm_Gapdh_M_f_at 0.11 0.53 0.95
   n.d. 0.00 AFFX-Zm_Gapdh_5_f_at 0.08 0.78 0.99
   n.d. 1e-118 Zm.16502.1.S1_at 0.13 0.51 0.95
   n.d. 2e-99 AFFX-Zm_Gapdh_3_s_at 0.10 0.33 0.87
   n.d. 6e-96 AFFX-Zm-gapdh-M_s_at 0.27 0.65 0.97
U7 Glyceraldehyde-3-phosphate dehydrogenase
   AF348583 1e-19 Zm.8992.2.A1_a_at -0.16 0.62 0.96
D11 Glyceraldehyde-3-phosphate dehydrogenase
   AF348583 5e-10 AFFX-Zm_Gapdh_M_f_at 0.11 0.53 0.95
D12 Triosaphosphate isomerase 1
   AH005585 1e-102 Zm.3889.1.A1_at 0.44 0.01 0.23
   n.d. 6e-67 Zm.3889.6.S1_at 0.15 0.50 0.94
D6 Histone H2B
   X57312 0.00 Zm.16065.1.S1_at 0.30 0.20 0.76
   n.d. 1e-134 Zm.14497.4.A1_at 0.36 0.15 0.70
   n.d. 1e-124 Zm.14497.1.A1_at 0.22 0.71 0.98
   n.d. 1e-115 Zm.15914.3.A1_s_at 0.63 0.19 0.74
D7 Regulator of RNAse activity A
   NM_191820 6e-94 Zm.12138.1.S1_at 0.06 0.85 0.99
   n.d. 1e-61 Zm.13462.1.A1_at 0.20 0.04 0.43
U5 Regulator of RNAse activity A
   EU958419 0.00 Zm.12138.1.S1_at 0.06 0.85 0.99
   n.d. 3e-32 Zm.13462.1.A1_at 0.20 0.04 0.43
D6 DEAD-family RNA helicase
   BT066085 0.00 Zm.13462.1.A1_at 0.20 0.04 0.43
   n.d. 1e-37 Zm.12138.1.S1_at 0.06 0.85 0.99
U6 Glycine-rich RNA-binding protein 8
   EU963577 1e-119 Zm.13944.7.A1_a_at 0.07 0.67 0.97
   n.d. 2e-73 Zm.13944.6.S1_a_at -0.15 0.69 0.98
D9 RNA recognition motif containing protein
   BT065318 0 Zm.6941.1.A1_at -0.17 0.07 0.51
   n.d. 1e-133 Zm.18107.1.S1_s_at -0.07 0.61 0.96
   n.d. 1e-97 ZmAffx.915.1.S1_at 0.00 0.99 1.00
D1 Pathogenesis-related protein 1
   EU957420 0.00 Zm.1967.1.A1_at 0.97 0.18 0.73
D2 Bet v I allergen
   AY754698 1e-164 Zm.7135.1.S1_at 0.26 0.19 0.75
U8 G-protein β-subunit
   NM_192099 3e-45 Zm.6045.7.A1_a_at -0.10 0.40 0.91
D13 Syntaxin 6
   NM_001072375 3e-16 Zm.3182.1.A1_at -0.08 0.52 0.95
U16 r40c1 protein
   BT042893 0.00 Zm.886.4.S1_x_at -0.03 0.90 1.00
U9 Mitochondrial ATP synthase precursor
   EU966003 0.00 Zm.5566.1.A1_a_at 0.17 0.10 0.61
   n.d. 0.00 Zm.886.5.S1_a_at -0.01 0.98 1.00
   n.d. 0.00 Zm.886.5.A1_at -0.21 0.37 0.90
   n.d. 0.00 Zm.886.2.S1_at 0.14 0.32 0.87
   n.d. 3e-98 Zm.12295.2.S1_a_at 0.21 0.52 0.95
   n.d. 6e-81 Zm.886.1.A1_a_at 0.17 0.81 0.99
D15 Cupin domain containing protein
   BT024037 7e-04 Zm.2927.1.A1_at 0.36 0.02 0.30
  1. The putative encoding genes were search by TBLASTN algorithm [GB#, GenBank accession number of maize RNA sequences; TBLASTN score; n.d., not determined]. The putative Affymetrix probe set represented in the GeneChip were searched by BLASTN algorithm in the NetAffx™ Analysis Center data set from Affymetrix (http://www.affymetrix.com/analysis/index.affx). The hybridization and significance values of microarray experiments for these genes are annotated [log2(R), p-value and FDR]