Table 1 Summary of the currently available contents in OryzaPG-DB*
From: OryzaPG-DB: Rice Proteome Database based on Shotgun Proteogenomics
Item | Current contents** | Remarks |
|---|---|---|
Proteins/cDNAs | 5,034 | Corresponds to MSU/TIGR (6.1) models |
Genes/us-mRNAs | 3,182 | Corresponds to MSU/TIGR (6.1) locus/transcript (TU) |
Total peptides | 15,121 | All identified non-redundant peptides |
Novel peptides | 166 | Peptides that are not present in the protein database |
Genes to be revised | 40 | Genes with peptides mapped to novel regions such as intron, exon-intron boundary and non-coding regions |