|
SSR Type/Genotype/Tissue source
|
G19833 set 1leaf cDNAs
|
G19833 set 2 leaf cDNAs
|
DOR364 root HP
|
DOR364 root LP
|
Total SSR and Seq.
|
|---|
|
Di-nucleotide motifs
1
| | | | | |
|
ac/gt/ca/tg
|
11.1
|
10.0
|
0.0
|
11.1
|
7.0
|
|
ag/ct/ga/tc
|
88.9
|
50.0
|
85.0
|
61.1
|
71.9
|
|
at/ta
|
0.0
|
40.0
|
15.0
|
27.8
|
21.1
|
|
gc/cg
|
0.0
|
0.0
|
0.0
|
0.0
|
0.0
|
|
Tri-nucleotide motifs
| | | | | |
|
aag/aga/gaa/ttc/tct/ctt
|
11.8
|
25.0
|
30.4
|
30.8
|
23.2
|
|
aat/ata/taa/tta/tat/att
|
2.9
|
0.0
|
4.3
|
7.7
|
4.0
|
|
aac/aca/caa/ttg/tgt/gtt
|
8.8
|
6.3
|
13.0
|
3.8
|
8.1
|
|
acc/cac/cca/tgg/gtg/ggt
|
17.6
|
6.3
|
4.3
|
19.2
|
13.1
|
|
agc/cag/gca/tcg/gtc/cgt
|
17.6
|
12.5
|
13.0
|
3.8
|
12.1
|
|
agg/gag/gga/tcc/ctc/cct
|
20.6
|
6.3
|
17.4
|
15.4
|
16.2
|
|
atc/cat/tca/tag/gta/agt
|
2.9
|
37.5
|
8.7
|
11.5
|
12.1
|
|
ccg/gcc/cgc/ggc/cgg/cgc
|
2.9
|
0.0
|
4.3
|
0.0
|
2.0
|
|
gac/cga/acg/ctg/gct/tgc
|
14.7
|
6.3
|
4.3
|
7.7
|
9.1
|
- Motifs are distinguished for di- and tri-nucleotide based simple sequence repeats (SSRs) used to create new BMc markers.
- 1Complementary sequences for a given motif are given and were the basis for grouping of di-nucleotide and tri-nucleotide motif SSR.
