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Table 2 Percentage of SSR types across four EST collections

From: Gene-based SSR markers for common bean (Phaseolus vulgarisL.) derived from root and leaf tissue ESTs: an integration of the BMc series

SSR Type/Genotype/Tissue source G19833 set 1leaf cDNAs G19833 set 2 leaf cDNAs DOR364 root HP DOR364 root LP Total SSR and Seq.
Di-nucleotide motifs 1      
ac/gt/ca/tg 11.1 10.0 0.0 11.1 7.0
ag/ct/ga/tc 88.9 50.0 85.0 61.1 71.9
at/ta 0.0 40.0 15.0 27.8 21.1
gc/cg 0.0 0.0 0.0 0.0 0.0
Tri-nucleotide motifs      
aag/aga/gaa/ttc/tct/ctt 11.8 25.0 30.4 30.8 23.2
aat/ata/taa/tta/tat/att 2.9 0.0 4.3 7.7 4.0
aac/aca/caa/ttg/tgt/gtt 8.8 6.3 13.0 3.8 8.1
acc/cac/cca/tgg/gtg/ggt 17.6 6.3 4.3 19.2 13.1
agc/cag/gca/tcg/gtc/cgt 17.6 12.5 13.0 3.8 12.1
agg/gag/gga/tcc/ctc/cct 20.6 6.3 17.4 15.4 16.2
atc/cat/tca/tag/gta/agt 2.9 37.5 8.7 11.5 12.1
ccg/gcc/cgc/ggc/cgg/cgc 2.9 0.0 4.3 0.0 2.0
gac/cga/acg/ctg/gct/tgc 14.7 6.3 4.3 7.7 9.1
  1. Motifs are distinguished for di- and tri-nucleotide based simple sequence repeats (SSRs) used to create new BMc markers.
  2. 1Complementary sequences for a given motif are given and were the basis for grouping of di-nucleotide and tri-nucleotide motif SSR.